G57498


Basic Information

Item Value
gene id G57498
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39497028 ~ 39497353 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77523
catttctttcGGCCGCGGGGCCGCTCACCTTGCGGCCGAGCGACGCTAAGACTCTGatgttaagtgaagtttaagggttaactttacctagcactcagtgctgcaCCTTTACAACTAAGGCCAtttctctgaaaacattttatccTTGTGTAGCAGACATTAACCGGACAATGGACACTGGACGAGAAAAACAGCCACACTCCACACCGGAATATGATGCTCTGCATTGTTTATTCTGAGTGAGACATGGGGCAGAATTAGTGCACaggcatacacacacaggctctgtctctccctcccctacttctctctctctctcgccagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77523 True 326 lncRNA 0.49 1 39497028 39497353

Neighbor

gene id symbol gene type direction distance location
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding upstream 9092 39406665 ~ 39487936 (+)
gkap1 gkap1 coding upstream 209221 39278427 ~ 39287807 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding upstream 220313 39269222 ~ 39276715 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding upstream 229395 39257525 ~ 39267633 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding upstream 1291427 38174971 ~ 38205601 (+)
LOC103032512 NA coding downstream 27262 39524615 ~ 39528505 (+)
LOC103030832 NA coding downstream 32262 39529615 ~ 39540542 (+)
LOC103029767 LOC108426735,LOC107757078,LOC107703986 coding downstream 44375 39541728 ~ 39560277 (+)
pqbp1 pqbp1 coding downstream 325490 39822843 ~ 39829393 (+)
LOC103038904 LOC108412149,LOC103139056,LOC106915889,LOC106954557 coding downstream 345958 39843311 ~ 39961259 (+)
G57473 NA non-coding upstream 119967 39374000 ~ 39377061 (+)
G57457 NA non-coding upstream 233053 39263171 ~ 39263975 (+)
G57427 NA non-coding upstream 399605 39095337 ~ 39097423 (+)
G57397 NA non-coding upstream 1173591 38323190 ~ 38323437 (+)
G57343 NA non-coding upstream 1247140 38249269 ~ 38249888 (+)
G57505 fkbp1aa,LOC107553142,LOC107574256,LOC103030299,LOC107752559 non-coding downstream 63075 39560428 ~ 39562898 (+)
G57538 NA non-coding downstream 229348 39726701 ~ 39730031 (+)
G57542 NA non-coding downstream 240207 39737560 ~ 39749700 (+)
G57636 praf2,LOC104927735,LOC106567233,LOC107702816 non-coding downstream 307925 39805278 ~ 39810668 (+)
G57638 NA non-coding downstream 314882 39812235 ~ 39813547 (+)
frmd3 frmd3,LOC107678471 other upstream 126443 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 343552 39109244 ~ 39153476 (+)
G57066 NA other upstream 2491230 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 3532518 35956104 ~ 35964510 (+)
G56504 NA other upstream 4038151 35420718 ~ 35458877 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 469737 39967090 ~ 40090271 (+)
G57664 NA other downstream 547300 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 1177687 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 1877336 41374689 ~ 41377445 (+)
G58025 NA other downstream 1940674 41438027 ~ 41438911 (+)

Expression


Co-expression Network