G57538


Basic Information

Item Value
gene id G57538
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39726701 ~ 39730031 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77572
CAAAAACATCCAGTTGCTACTGACAAtactttattaaacatgaaGAAGATacacaaggagagagagagaggagggaggaaCAAAGCGGCAAAGAAGAGAAGGGGACAACCAGACTGCTTCAAAGTGAACAGCATCATCTTAACACTTGGAAATACAGTGAACATACTGTTTAGGGGTCAACCATTCCCTCCCACTCCTGACTTATTGTAGAGAAAGAACATGAACAAGGGTGTGGCTGGGTTCACTATATGCATAATAAGTTATGGAATTAAAATCTACTTACAACACTCCGCACATACTTATTCTCATTGTTTTGTCTTTAGCATTTATAAAGATGCATTTTTCTAAAAGTTTTTAGATAATCCAAAGGTTGGATAAACCCTTAAACCCATTAAGCACTGTATGGAAGCCCACACTTCATTACTGACCTACTTTGAATCAGTTGTATAGGCCCCAGGATTAGaacctgtgggactccacaaaaTCTAGTAAGGGCTATACACTGGTTTACAGCTTTAGAAATAACTGAATTGTCAAGTTAGTGTTTAAGGGGTTGAAGATGTACAGATTAGATATAAAGACTAACAGAGAAACTCTGTTTTACTGTATGAAGTTCTGAAAAACTCCATCAATAATTTAAATCCTATATCCCGTTTGTCAAATGATTCACAAGGAGATTTGGTTCCCCTTTCCAACGTTACAAAATGACAGGAGTATAGCATCAAGCAACAGCCTGGGTTcacttttaaggtggaacagttCTGTCAGCCTGAAGAAAAGCAGTTAAGGACAAAATGATTTAATTGTTAAGATAGAGAACAGAGAGCTGTATCACCCTTCCTTtgatgtataaatagtataaCGTTTTATATAGACATATTTTGACCAGAATTGTCACCACTTTAGCATGTTAGCGTGTTTCACAAATTTTAAATTACAAGTTTTTGTTATATCTGTCAAGATCAGACACTTATAATCCAGTTCTACTGTTTGTGTAGTTGATGTCAGGAGATGCTAGCTGACACATTTGTGGTAGTTTTTACCTATATTTACACTACTGTAATCTGGCTTGTGCTCTTATCCAGACAACTTACATTTGAATCAAGTTACACTGGCGAGTGGATGTAATGTAAGGAGTCTTGCTTAAGGACTGCCTTTGCAAGGCAATCAAACTCTAGCCAGACCAGAGGAAAGCTGGTGATTTTAACCATTACACTAGTTCTTCAGTGTGTATACAGCAGCATTTACAGTCCTGTGCAAAATATTAAGACACCAATACACACCAGgttagatttttaaaattttgttgtTAACCAGTTCTCCTCAGAGCAGCACAGTATTATTGGTGGTCACTGTCCAACAACTAGTTTGGATAATGACCACTTAATTAAGTTGAATCAAGTGTGCTGGTGATTTAGGTGTTGTGTGCTGTGAgaattgtttttccttttttttttttttttttagaacagggcagtaaaaaaaatacagtaaaagtcTAAAGATAATTTTTactgtaccgtatttttcacacaataaggcacacttaaaatccttttaattccccaaaaatcatcagtgcaccttctaatccggtgcgccttatgtatgattttttgctgctaactgcattgagactagctcttttgctgttcagaagtgagtattatcggcctgtatcctcctgctaaccctggctggcactgctggagcagcattagcattagccaccacCTGCACTGAGCACTAGTtctttggctgttcagaggcgagaaTATCGGTCTGTAGTTTGCACATTTACAGTGTTGTAACAAGCTAcctgggatgaaccgctagctaatatcgccctggcttacaggaacactcaAGAGTTCCTCAGTATAGCACTGTCacgtggcattagctgctaacgttagcggtagttttgtttacttaacttagcttaactttaTAGTTCTCACCACCCAGTGGCtagacctgctgaatttagaaggaaaacaaggcgacacccctgttcctactactagttactagggttgcataaaatgcgccttattatctgatgcaccttatagtgtgaaaaatatggtatttgtGTTTACTTGCAGCTATTCAAGTAGTACAGTAGTGCTCAGGTGcctaaaatgtttacacagtaCTCCCTCCCTGGCTCAGTGTGGAATTGTACTCACAtcacattttacaaaaataaaagtccctcttttttttattttttgatattgAAACAAACGGGAAAATGCAGGAAAAGCAGACTCGAACCTGTCGATAcagaatgaaaatataatatgaATGTATGGTAAGTGTTCATTAGGTAGCTGTCATTACGCATGCAATCGAGCAAAACGACATTTATAACTGAAGACATCTTAAGGGTTAAGagtctgtttgtctgtatttTCAAGGATAGTCAGCTAATAAGCCTCTTAAGAATTCCTCTGTGTTcccctttttctctccctctcatgTGGAACATCTCTTCCATTTCTCCATCAAACTACCGGTAACCTTTGTTCCCACTTTCTTTATCCATCTATTTATCTTTAATTCCTAGAACgtttcaaacaaataaaaaataaataaaacaaaaccacaCATTCATACTGAAGTTTCACACTCATCCCTCTTGCTGTAGTCAGAATGTAATTAGTGatagacaagagagagagaaaaagacacaataaaccaaaaaaagaaaaagagaaaatgaacagtatgaaaacaaaagcaggatgaacTACTGAGCTACCAAACAAACTGGCTACAACACACGGTGAGTCCTTCTGTTCTCAAGTCACGAACAGACAATAACCATTCATCTGAGCATTTATTCACAATATAGagctatttaaatatatttttatatatatattataattattatttacacagCACAGACAAATACATTCCTTCAAGATTAATATTACTAGAATTCATTCCAATTGGCTTCAGTCCCATacataaagtatactttttataattctttttttttttcattttggtgTTCAAGTCATTCTTTATTATAATAAGATAAGCACCCCCCTCGAAGTCTGCAGCAGAAAACTCAAATCAAGAGTAGAGAGCGTGGTTAAATGATTTTCTCGTAAACCCAGcacatttccacatttccaGAGGATATGATATTAATAACACTGCCCCATGTCACTCACagaTCATATAGGGAAACTTGGGGGAGTGTGGAATTGTGGGTAATAGTCAGGCTCCGCACTTCTTGGTCACGTAACTGTCTTCTCCTGTTGTCTG

Function

NR:

description
PREDICTED: proenkephalin-A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77572 True 3282 lncRNA 0.37 2 39726701 39730031

Neighbor

gene id symbol gene type direction distance location
LOC103029767 LOC108426735,LOC107757078,LOC107703986 coding upstream 166424 39541728 ~ 39560277 (+)
LOC103030832 NA coding upstream 186159 39529615 ~ 39540542 (+)
LOC103032512 NA coding upstream 198196 39524615 ~ 39528505 (+)
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding upstream 238765 39406665 ~ 39487936 (+)
gkap1 gkap1 coding upstream 438894 39278427 ~ 39287807 (+)
pqbp1 pqbp1 coding downstream 92812 39822843 ~ 39829393 (+)
LOC103038904 LOC108412149,LOC103139056,LOC106915889,LOC106954557 coding downstream 113280 39843311 ~ 39961259 (+)
kdm5c kdm5c,LOC108265475,LOC107550909,LOC107747206,LOC107570512,LOC107724909,LOC107702826 coding downstream 366232 40096263 ~ 40125035 (+)
LOC103035670 NA coding downstream 414033 40144064 ~ 40150072 (+)
LOC103036504 ren,LOC107727110,LOC107570508,LOC106566646,LOC107747224 coding downstream 507011 40237042 ~ 40247286 (+)
G57505 fkbp1aa,LOC107553142,LOC107574256,LOC103030299,LOC107752559 non-coding upstream 163803 39560428 ~ 39562898 (+)
G57498 NA non-coding upstream 229348 39497028 ~ 39497353 (+)
G57473 NA non-coding upstream 349640 39374000 ~ 39377061 (+)
G57457 NA non-coding upstream 462726 39263171 ~ 39263975 (+)
G57427 NA non-coding upstream 629278 39095337 ~ 39097423 (+)
G57542 NA non-coding downstream 7529 39737560 ~ 39749700 (+)
G57636 praf2,LOC104927735,LOC106567233,LOC107702816 non-coding downstream 75247 39805278 ~ 39810668 (+)
G57638 NA non-coding downstream 82204 39812235 ~ 39813547 (+)
G57640 NA non-coding downstream 84655 39814686 ~ 39815046 (+)
G57647 NA non-coding downstream 100640 39830671 ~ 39831697 (+)
frmd3 frmd3,LOC107678471 other upstream 356116 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 573225 39109244 ~ 39153476 (+)
G57066 NA other upstream 2720903 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 3762191 35956104 ~ 35964510 (+)
G56504 NA other upstream 4267824 35420718 ~ 35458877 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 237059 39967090 ~ 40090271 (+)
G57664 NA other downstream 314622 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 945009 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 1644658 41374689 ~ 41377445 (+)
G58025 NA other downstream 1707996 41438027 ~ 41438911 (+)

Expression


Co-expression Network