G57664


Basic Information

Item Value
gene id G57664
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40044653 ~ 40046467 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77738
TCAAGATGCTGGTTAGACGCTGATTATTACACAGGTGTACATTGGGCTCACTAAAATGTGTACTTTTGTCACAAAGCACAATGCCACAGATGTTGCAAGTTTTGAGGAAGCGTGCAATTGGCCATGCTAACTGCAGGAATATTCACCAAAGGTGTTACGCCCGTGAATTGAATGTTCATTTCTCCACCATAAGACATCTCCAAAGGCGGTTCAGAGAATTTGGCAGTACATCCAACCGGCTGTACAATCGCAGACCATGTGTAAGCAGACCAGCTCAGGACCTGAACATCCAGCATCTTCACCTCCCAAATCATCTGAGACCGGCCACCCGGACAGCTAACAATTATTTTGCCTTACCAAAGAATTTCTGCACAAAATGTCGGGAACCGTCTCAGGGAAGCTCATCTGCATTCTCATTGTACTCATCAGGGGCGTAATCGACAAATGCTCACATTCGATGGTGTCTGGCACAGTGTTCTCTTTACAGATAAATGGTGGttatctgctgctgcatttTATGAATGGAATTTTGAATGCACAGAGATACCGTGATGAGATCCTGAGGCTCATTGTTGTGCCATTCATTCATGACCGTAACCTCATGTTGCAGCATGATAACGCGCAGCAACTTCGCACAGCCAATAAAGCGGAATGGACCAACATTCCACAGGACACAATCAACAACCTGATCAACTCTATGTGAAGGAGAAATAGTGGTGAttgggctgtgaatctttgggaatccaACAATTCGATTCAGAGTCGATTCTTGGGGTCACGATTCAagtagctgagctctgcaggacagtagatgagctccacggtacagttaaagagctctgtgcgacagtaggtgagctccgcggtacagttaaaaagctctgtgcgacagttaaaaagctacGCACGACAGTTAAAAAGCGCCGCAGTACAGTAAAAAAGCTCCGTGTGACAGTATCAGCatccgcaaaaaaaaaaaaaattttttgaaaatgagaattgACCCTGAATGTTAGAAACACAATTCGAGCTTGAAtcgattttttcctgcacccctaTTGGTGACACTAGATACTGACTGGTTTTCCAAACCTTTCACAATACTGTAAAACTGCACACTTTTACAGGGTTCATTCGGTCATGAAAAACCATGAAAAGTCATGGAGTTTGAAAAAAGCaattccaggcctggataagttttaaaaaataaaaattaaagtaaaattaaagaaagttttggaaaatcatggaaatttgctctacaaatgtttttcatttattgaCAGAAAAGCTATTTTAAGCTAACAAATCAGATCAGTTACTTTAGTAATTAATCCCCACACAATGAAGCTCTCAGGATTTgagacacattttattaatgaaGATTCTGTCTATTATCAATTTtgattacagtttattattgtttgtccatgtctgcactggtGTTTTAAAGGTTGCATgttcatgaaaatttgccttgaagtcATAAAATAgtaatggaaatgtattgttttaaaaatgtatgaaccctacttttattgtggtaagcC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77738 True 1550 TUCP 0.40 4 40044653 40046467

Neighbor

gene id symbol gene type direction distance location
LOC103038904 LOC108412149,LOC103139056,LOC106915889,LOC106954557 coding upstream 83394 39843311 ~ 39961259 (+)
pqbp1 pqbp1 coding upstream 215260 39822843 ~ 39829393 (+)
LOC103029767 LOC108426735,LOC107757078,LOC107703986 coding upstream 484376 39541728 ~ 39560277 (+)
LOC103030832 NA coding upstream 504111 39529615 ~ 39540542 (+)
LOC103032512 NA coding upstream 516148 39524615 ~ 39528505 (+)
kdm5c kdm5c,LOC108265475,LOC107550909,LOC107747206,LOC107570512,LOC107724909,LOC107702826 coding downstream 49796 40096263 ~ 40125035 (+)
LOC103035670 NA coding downstream 97597 40144064 ~ 40150072 (+)
LOC103036504 ren,LOC107727110,LOC107570508,LOC106566646,LOC107747224 coding downstream 190575 40237042 ~ 40247286 (+)
LOC103035984 LOC103035984 coding downstream 212054 40258521 ~ 40285301 (+)
LOC111192734 LOC108414049 coding downstream 436543 40483010 ~ 40486574 (+)
G57658 NA non-coding upstream 70210 39942902 ~ 39974443 (+)
G57646 LOC103467951 non-coding upstream 202723 39833877 ~ 39841930 (+)
G57647 NA non-coding upstream 212956 39830671 ~ 39831697 (+)
G57640 NA non-coding upstream 229607 39814686 ~ 39815046 (+)
G57638 NA non-coding upstream 231106 39812235 ~ 39813547 (+)
G57749 NA non-coding downstream 116579 40163046 ~ 40164251 (+)
G57755 NA non-coding downstream 132140 40178607 ~ 40179164 (+)
G57763 NA non-coding downstream 176638 40223105 ~ 40225655 (+)
G57773 rbm39b,LOC108442077,LOC108265754 non-coding downstream 246341 40292808 ~ 40300515 (+)
G57790 LOC108265753,LOC107570510,LOC107724755,LOC107702833,LOC104935322 non-coding downstream 262028 40308495 ~ 40312828 (+)
frmd3 frmd3,LOC107678471 other upstream 674068 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 891177 39109244 ~ 39153476 (+)
G57066 NA other upstream 3038855 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 4080143 35956104 ~ 35964510 (+)
G56504 NA other upstream 4585776 35420718 ~ 35458877 (+)
G57856 tp73 other downstream 628573 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 1328222 41374689 ~ 41377445 (+)
G58025 NA other downstream 1391560 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 1989372 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 2162254 42208721 ~ 42281970 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G305017 NA non-coding CI01000092 null 2311366 ~ 2311680 (-)
rainbow trout (Oncorhynchus mykiss) tjap1 tjap1 misc NC_048565.1 CM023219.2 66806836 ~ 66883731 (-)
bowfin (Amia calva) G65815 NA non-coding CM030127.1 CM030127.1 33981790 ~ 33982026 (-)
mexican tetra (Astyanax mexicanus) G61014 NA misc NC_035903.1 CM008306.1 806565 ~ 1049056 (+)