G57727 (kdm5c,LOC107550909,LOC107747206,LOC107570512)


Basic Information

Item Value
gene id G57727
gene name kdm5c,LOC107550909,LOC107747206,LOC107570512
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40117789 ~ 40119095 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77816
gcttattaaaaatgaaaagaagatGAAAGATGAAAAGAGATAACAAATGTGCAGTTCTTGCCTGGATCTCCTCCAAATCGGTGACCCAGGCACGTGCCCGGCTTAGGCAGGCCTGCAGAGACAGGATGTTAGGCAACTGCACCGGGATCAGCTGGGCCTCATTCACTATGGCCTCCAGTGTTGAGAGAGGATGCTTCTGCCTGTGCTCCAGGCAAATCTGGGCCTTTTCTTCCCAGCGCTCAGCAATGGTTAacagctcctgcagctctgcCATGGCAGTCTCCACGCCTACACTCTGTGGCACGTTGCAGCCGGCCTCCATCAGGTTTCTCAGCACCGCCAGCGTCACCTCTCCACCCTCCGGCCCCAGCGTCCGCCGCACCTGCTCCAGCCAGCGACCCTGCTCCTGCAGCCCACTGAGCATCTCGCATACAGGGGCCACTACTGGCAGCAGGGCCCCCTCATCCAGCAGAGCCTTGATATCCCCTGCCGGAGGAGAAGCAGCATCCTTCTTCCACTCGtctccactgctgttcactAGCGCCTGTCCGCGGGATTCAAATTCCTCAAGCTTCTTTAATACAGCCTG

Function

symbol description
kdm5c Predicted to enable histone demethylase activity (H3-trimethyl-K4 specific). Acts upstream of or within negative regulation of neuron apoptotic process. Predicted to be active in nucleus. Is expressed in brain; head; muscle; and spinal cord. Human ortholog(s) of this gene implicated in syndromic X-linked intellectual disability Claes-Jensen type. Orthologous to several human genes including KDM5C (lysine demethylase 5C).

NR:

description
PREDICTED: lysine-specific demethylase 5C isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77816 True 589 TUCP 0.57 2 40117789 40119095

Neighbor

gene id symbol gene type direction distance location
gpkow NA coding downstream 275843 39830654 ~ 39841946 (-)
timm17b timm17b,LOC107722912 coding downstream 296335 39815860 ~ 39821454 (-)
praf2 praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816 coding downstream 302768 39806607 ~ 39815021 (-)
LOC103034295 cacna1f,LOC108426741,LOC107756819 coding downstream 315137 39757462 ~ 39802652 (-)
LOC103028093 syp,sypb,LOC108426646,LOC107678440,LOC107553146 coding downstream 362186 39729088 ~ 39755603 (-)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding upstream 7119 40126214 ~ 40140995 (-)
LOC111192685 LOC108442090 coding upstream 31552 40150647 ~ 40160654 (-)
LOC103039838 LOC108442080 coding upstream 74398 40193493 ~ 40225510 (-)
LOC103037644 rbm39b,LOC108442077,LOC108265754,LOC106566652,LOC105906838 coding upstream 172694 40291789 ~ 40304589 (-)
LOC111192686 LOC107724755,LOC107570510,LOC107702833,LOC108265753 coding upstream 189399 40308494 ~ 40310734 (-)
G57704 LOC108442091 non-coding downstream 27538 39987484 ~ 40090251 (-)
LOC111192684 NA non-coding downstream 150469 39912120 ~ 39967320 (-)
G57671 pqbp1 non-coding downstream 288437 39822681 ~ 39829352 (-)
G57623 NA non-coding downstream 396177 39719431 ~ 39721612 (-)
G57560 frmd3 non-coding downstream 750080 39363085 ~ 39367709 (-)
G57729 kdm5c non-coding upstream 2390 40121485 ~ 40124946 (-)
G57748 NA non-coding upstream 42432 40161527 ~ 40162104 (-)
G57754 NA non-coding upstream 43889 40162984 ~ 40164280 (-)
G57782 NA non-coding upstream 136472 40255567 ~ 40255816 (-)
G57788 NA non-coding upstream 171882 40290977 ~ 40291186 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 554868 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1812323 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2791053 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2818182 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 3325345 36785308 ~ 36792444 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 46305 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 629646 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1276991 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2983775 43102870 ~ 43107623 (-)
G58537 NA other upstream 3563229 43682324 ~ 43682684 (-)

Expression


Co-expression Network