G57748


Basic Information

Item Value
gene id G57748
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40161527 ~ 40162104 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77855
gtttataactacggagtttagtggacacaccacggctgcaaggttagactgttgaaggctactgaagactattaaaggctattggaggttattgaaagggttattgggggcagaaatcagtaaaggctggttagataagtgattcacgtcctcgtcctttTCTGCGGTGAAACTgggactagcgctgtcacagtgatgtttattaacgtcattaaaacagattttgtcaggtattgtcttataaatatttacacataacttatatctctcctaaaaagcgtttattttggtcagtaacactcttgtgtttatttactatcagtgtaaattaccagtgtttgctttggcgtggatgtaattagAGGAAACACGTCGTGTCGCTCATTGCTACGTCATCATATTATGGACTAGTTCAGTGCAAGCAACGGAGGggggtatgtgtgtttggacaattagtatttagacattaattcggtattctactgatatttctgttgtttttttaatagaaatatgttttttctttactttacataagtaacaaattaacattgtttttggtgtatttactgtagctg

Function

GO:

id name namespace
GO:0004175 endopeptidase activity molecular_function
GO:0052689 carboxylic ester hydrolase activity molecular_function
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0017171 serine hydrolase activity molecular_function
GO:0004104 cholinesterase activity molecular_function

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU77855 True 578 lncRNA 0.36 1 40161527 40162104

Neighbor

gene id symbol gene type direction distance location
LOC111192685 LOC108442090 coding downstream 873 40150647 ~ 40160654 (-)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 20532 40126214 ~ 40140995 (-)
gpkow NA coding downstream 319581 39830654 ~ 39841946 (-)
timm17b timm17b,LOC107722912 coding downstream 340073 39815860 ~ 39821454 (-)
praf2 praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816 coding downstream 346506 39806607 ~ 39815021 (-)
LOC103039838 LOC108442080 coding upstream 31389 40193493 ~ 40225510 (-)
LOC103037644 rbm39b,LOC108442077,LOC108265754,LOC106566652,LOC105906838 coding upstream 129685 40291789 ~ 40304589 (-)
LOC111192686 LOC107724755,LOC107570510,LOC107702833,LOC108265753 coding upstream 146390 40308494 ~ 40310734 (-)
LOC103040464 slc12a5b,LOC107550951,LOC108265753,LOC105007608,LOC100697313,LOC108232092,LOC103467545,LOC108442076,LOC107683884,LOC107747216 coding upstream 149615 40311719 ~ 40432211 (-)
eif2d eif2d coding upstream 330594 40492698 ~ 40508889 (-)
G57729 kdm5c non-coding downstream 36581 40121485 ~ 40124946 (-)
G57704 LOC108442091 non-coding downstream 71276 39987484 ~ 40090251 (-)
LOC111192684 NA non-coding downstream 194207 39912120 ~ 39967320 (-)
G57671 pqbp1 non-coding downstream 332175 39822681 ~ 39829352 (-)
G57623 NA non-coding downstream 439915 39719431 ~ 39721612 (-)
G57754 NA non-coding upstream 880 40162984 ~ 40164280 (-)
G57782 NA non-coding upstream 93463 40255567 ~ 40255816 (-)
G57788 NA non-coding upstream 128873 40290977 ~ 40291186 (-)
G57916 NA non-coding upstream 502416 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 579410 40741514 ~ 40748539 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 42432 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 598606 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1856061 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2834791 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2861920 37281113 ~ 37299607 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 3296 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 586637 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1233982 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2940766 43102870 ~ 43107623 (-)
G58537 NA other upstream 3520220 43682324 ~ 43682684 (-)

Expression


Co-expression Network