LOC103037008 (LOC108442081,LOC105022382,LOC106567250)


Basic Information

Item Value
gene id LOC103037008
gene name LOC108442081,LOC105022382,LOC106567250
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40165400 ~ 40179141 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77868
tgaaatactgtaaaatgtcTCTGCAGAGAGTCGGGGGGCTCGGCCGCTCGCTGTGGCAGGGCGGCAGCAGGACTCCGCCGCTGGCCCGGAGACACGGAGCCTTCTCCAGCCGGAGTGCAGCGCCCCGCTCCGCCTGCACTGCAGACCCGAGCTGCGGGGACGGAGCCTGCGGCAGCAGCTGCTGCCCTCCACCTGCcctgcctcctcctcctacACACCCCGCCGCGGCCTCCAGACTCCAGCGTGCGGGGAAAGCGCGCTCTGAGGAGGCGCTGAACGTGTCCGGGCGCTCCTTCTCCTCCACAGCGCTGAAGGTGGAGCAGAAGTCCTACCTGTGGGCTCGGTACAGTGAGATGAAGCGGCTGGTGCACG
>XM_022670929.1
GGGGCTGTTTACTGTgactctgcagcagcagcagcggcggctgCTCTCAGGGTGTTCCGCAGGGCAGTAATAAtgtgaaatactgtaaaatgtcTCTGCAGAGAGTCGGGGGGCTCGGCCGCTCGCTGTGGCAGGGCGGCAGCAGGACTCCGCCGCTGGCCCGGAGACACGGAGCCTTCTCCAGCCGGAGTGCAGCGCCCCGCTCCGCCTGCACTGCAGACCCGAGCTGCGGGGACGGAGCCTGCGGCAGCAGCTGCTGCCCTCCACCTGCcctgcctcctcctcctacACACCCCGCCGCGGCCTCCAGACTCCAGCGTGCGGGGAAAGCGCGCTCTGAGGAGGCGCTGAACGTGTCCGGGCGCTCCTTCTCCTCCACAGCGCTGAAGGTGGAGCAGAAGTCCTACCTGTGGGCTCGGTACAGTGAGATGAAGCGGCTGGTGCACGTAAACCAAAAGACATGCACTGCCCAACAACTAAACATAGCCGGTGTTCAGAATATTGTATTGCAGTTGTTTATTCTTACTATGTTCTCCTTAGAAAATACTTGCACTCtcttgcctctttttttttgttcttcacaGGAAGCGATTGGCATGGTGCACATTAAAGGCTACATGTACAAGTGGATTATGGAAGATCTGGaAAAATACATTCTCAGAGGAGAGGAGACATATGCAGTGCTTCACCGGCTGGTTAGTCatgggaagaagctgttccTCATCACAAACAGCCCTTTCAGCTTTGTTGATAAGGGGATGAGATACATGGTCGGAAAAGACTGGAGAGATTTCTTTGATGTCGTCATCGTTCAAGCAGACAAGCCCCATTTTTTCAATGATGCCAAACCATTCAGGCGTCTGGACAGCCAAGGGGACCTCCAGTGGGATAAGATCAATAATTTAGAAAAGGGTCAAGTCTACAAACAGGGAAATCTCTTTGATTTCCTCCGACTAACAGGCTGGAGAGGGTCCAAGGTGCTGTACTTTGGAGACCACCTCTACAGTGACCTGGCGGACCTGATGCTGCGTCACGGCTGGCGTACAGGGGCCATCGTTCCTGAACTGGAGCTGGAGACGAAGGTGGTGAACACAGAGCAATATGCTCAGAGTCTCACCTGGCTACAGGCCCTCACTGGACTGCTGGAGCGCATGCAGATGTATCGAGATCCCGGCTCCAGAGAGGTTCTGCAGGAGTGGTTGAAAGAGCGAGAAGAACTACGCGCCAGAACCAAGAACCTCTTCAACCCACAGTTCGGCAGCATCTTCCGCACGTGCCACAATCCCACCTACTTCTCCCGGCGCCTCTGCCGCTTCTCCGACCTCTACATGGCTTCTATCAGCTGCCTGCTGAACTATGACCTTTCCTACACCTTCTACCCACGCCGCACGCCCCTGCAGCACGAAGCCCCACTCTGGATGGACCAGCTCTGCACTGGCTGCATGAAGACCCCCTTCCTGGAGGAGATGGCACACATTCgctaatagtttttttttaggagataTACAGTTAGAGCCATAAacatttggacagtgacacagtTTTATGATTTGGGCTGTGCATGCCAGCACACTGGAAATTAAACGAAACAAAGTTAATGTAACTAAAATGTAGACGTTTAGGTTTACataaaagggttaaataaaaatatccttTAAAGCATTTAGGAATTACATCCATTTTTCACAAAGCATTCTCATTTCAGGAGTTTtaaagtaattggacaaattATCTAAAAAGCTGTTTTACAGACTGCATGAGCTATTTCCTCCTCAATCCACCATCAGTTAGGCAGGTAAAAGGTCTGGATATGATTCCAGTTGTGACATTTGCATTTGGAAGTGAAACAGACCATCAttagactgaaaaaaataagaaattcatTAGAAAGGTgcatttttgtgaaaataaagAGTGCAGTGGTGAACTAAGGAACTCAAAAACCCTGGTCCTCCAAAGAAGACAACAGTGGGGGATGTTTACAGAATCCTTTCCatggtgaagaaaaaaaaccttcacaACAT

Function

NR:

description
PREDICTED: 5'-nucleotidase domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77868 False 372 TUCP 0.68 1 40178695 40179066
XM_022670929.1 True 2024 mRNA 0.50 9 40165400 40179141

Neighbor

gene id symbol gene type direction distance location
LOC111192685 LOC108442090 coding downstream 4746 40150647 ~ 40160654 (-)
renbp renbp,LOC107683888,LOC107747208,LOC107702837,LOC107725049 coding downstream 24405 40126214 ~ 40140995 (-)
gpkow NA coding downstream 323454 39830654 ~ 39841946 (-)
timm17b timm17b,LOC107722912 coding downstream 343946 39815860 ~ 39821454 (-)
praf2 praf2,LOC107691574,LOC107756831,LOC107565129,LOC107702816 coding downstream 350379 39806607 ~ 39815021 (-)
LOC103039838 LOC108442080 coding upstream 14352 40193493 ~ 40225510 (-)
LOC103037644 rbm39b,LOC108442077,LOC108265754,LOC106566652,LOC105906838 coding upstream 112648 40291789 ~ 40304589 (-)
LOC111192686 LOC107724755,LOC107570510,LOC107702833,LOC108265753 coding upstream 129353 40308494 ~ 40310734 (-)
LOC103040464 slc12a5b,LOC107550951,LOC108265753,LOC105007608,LOC100697313,LOC108232092,LOC103467545,LOC108442076,LOC107683884,LOC107747216 coding upstream 132578 40311719 ~ 40432211 (-)
eif2d eif2d coding upstream 313557 40492698 ~ 40508889 (-)
G57754 NA non-coding downstream 1120 40162984 ~ 40164280 (-)
G57748 NA non-coding downstream 3296 40161527 ~ 40162104 (-)
G57729 kdm5c non-coding downstream 40454 40121485 ~ 40124946 (-)
G57704 LOC108442091 non-coding downstream 75149 39987484 ~ 40090251 (-)
LOC111192684 NA non-coding downstream 198080 39912120 ~ 39967320 (-)
G57782 NA non-coding upstream 76426 40255567 ~ 40255816 (-)
G57788 NA non-coding upstream 111836 40290977 ~ 40291186 (-)
G57916 NA non-coding upstream 485379 40664520 ~ 40664764 (-)
G57925 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 non-coding upstream 562373 40741514 ~ 40748539 (-)
G57920 NA non-coding upstream 582354 40761495 ~ 40762172 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 46305 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 602479 39521544 ~ 39562921 (-)
LOC111192682 NA other downstream 1859934 38261117 ~ 38305466 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 2838664 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 2865793 37281113 ~ 37299607 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 569600 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 1216945 41396086 ~ 41398478 (-)
G58435 aaas other upstream 2923729 43102870 ~ 43107623 (-)
G58537 NA other upstream 3503183 43682324 ~ 43682684 (-)
G58649 NA other upstream 4188759 44367900 ~ 44368368 (-)

Expression


Co-expression Network