G57856 (tp73)


Basic Information

Item Value
gene id G57856
gene name tp73
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 40675040 ~ 40680555 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78022
gttgctgttgcCTGTAGGTGTCTACCAACTGCTGTGGCACCAATTCCACTAATTCTAAACTGTCTTTGATCTTCATCAGGAGGTCAAAGTTCTCCCGTCCTCGCACTGGGATGTAGTACATCTCCTCTTCTCCATGTCTTCTCTTCTTGATGTTGATGGGAGGGCCTGGAATGTTGGGTGGGGTCTGTCTGAAatTGCGTTTGTTGGCATTGCCATTCTTGGCTACGCTCTCATTAAGTGCCTGCTGTTCTCTGAAGTGATCTTCATCTGCTTTACGGTCTCGGCCTGGGCAGGCACATATCCGGCCTTCAAAAGAGCGACGTCCCAACACCTGACCGTCTCTTGTCTCCAGGgtaatgatgatgaggatggGCCTGCGGTTCATTCCACCGACACAGCTGCTGTTGCACATGAAATTATACAAAATTGTTGTGAACTCTGTTCCCACCTGTGGGGTTTCATAAGGTacaaatacactctgtctgCCCGTTACTGGATCGTCCACATATTGACTCAAGTTATTCCCCTCAACTCTGATCAAATGGCTGGCTGGAGCAGACTGAcTTTCGTTGAATTCACGCCCAAGCTCGTGGTTGGGGCAGCGCTTGACAACTTCAGTCACATGTTCAGCTTTCTTGTAGATGGGCATGGCTCGTACCACACT

Function

symbol description
tp73 Enables DNA-binding transcription factor activity. Acts upstream of or within embryonic cranial skeleton morphogenesis and regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Predicted to be part of transcription regulator complex. Is expressed in several structures, including gonad; musculature system; nervous system; pharynx; and renal system. Human ortholog(s) of this gene implicated in breast cancer; lung cancer; nephroblastoma; and renal cell carcinoma. Orthologous to human TP73 (tumor protein p73).

NR:

description
PREDICTED: tumor protein p73 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78022 True 664 TUCP 0.49 6 40675040 40680555

Neighbor

gene id symbol gene type direction distance location
trnaw-cca_40 NA coding upstream 74978 40599991 ~ 40600062 (+)
LOC103023889 LOC108414619 coding upstream 121889 40543509 ~ 40553151 (+)
LOC103024512 mapkapk2,LOC108414051,LOC107683909,LOC107550950 coding upstream 144047 40512253 ~ 40530993 (+)
LOC111192734 LOC108414049 coding upstream 188466 40483010 ~ 40486574 (+)
LOC103035984 LOC103035984 coding upstream 389739 40258521 ~ 40285301 (+)
wrap73 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 coding downstream 40249 40720804 ~ 40748739 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding downstream 624755 41305310 ~ 41315208 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding downstream 638170 41318725 ~ 41335582 (+)
nppa NA coding downstream 709064 41389619 ~ 41390496 (+)
LOC103032860 LOC103032860,LOC108432146 coding downstream 715586 41396141 ~ 41398105 (+)
G57846 NA non-coding upstream 32910 40639600 ~ 40642130 (+)
G57825 LOC103026801,LOC108414620,LOC107756851,LOC107702881,LOC107573971,LOC107691553,LOC107566963,LOC108265407 non-coding upstream 47482 40619569 ~ 40627558 (+)
G57834 NA non-coding upstream 86882 40587408 ~ 40588158 (+)
G57831 LOC103023575,LOC108414617,LOC108433700,LOC103460371,LOC103156966,LOC108265406,LOC100694607,LOC105906813 non-coding upstream 90552 40579915 ~ 40584488 (+)
G57824 ywhaba,LOC103023259,LOC108414621,LOC107708121,LOC107584065,LOC107595428,LOC108412308 non-coding upstream 95239 40547555 ~ 40579801 (+)
G57864 NA non-coding downstream 34955 40715510 ~ 40715994 (+)
G57867 tprg1l non-coding downstream 71947 40752502 ~ 40752961 (+)
G57860 NA non-coding downstream 81783 40762338 ~ 40763482 (+)
G57880 NA non-coding downstream 391831 41072386 ~ 41075376 (+)
G57965 NA non-coding downstream 557766 41238321 ~ 41238669 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 584769 39967090 ~ 40090271 (+)
G57664 NA other upstream 628573 40044653 ~ 40046467 (+)
frmd3 frmd3,LOC107678471 other upstream 1304455 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 1521564 39109244 ~ 39153476 (+)
G57066 NA other upstream 3669242 37005273 ~ 37005798 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 694134 41374689 ~ 41377445 (+)
G58025 NA other downstream 757472 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 1355284 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 1528166 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 1854346 42534901 ~ 42576703 (+)

Expression


Co-expression Network