G57967


Basic Information

Item Value
gene id G57967
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41245137 ~ 41247541 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78159
ttttttatttcatcttcAACATTTGCAGGTTACAAGACATTTCATTACAACCATCACTGCATGCACACATATCTCTACATGACTACTGACACAGAATCTGTGGGTCAACCAAGTTTATCATTTTTCTCTGCTTACCTGCTGACCACAAGGCAAAAGATACAAAACTGAATTTACATTTTAGACAgagcgagaaaaaaaaacagcaaatataaaGTGCACAATCAGTGAAGAGCTCTTCAGATTGCTTCCTTAAACACTTGGCACAAACCAGAGTCCAAACTCAACAAGCTATTACACATGACCGGGACAGAGGAGGGAATAATAAGTGGTGGTTTATACACATACTGGGTCACTACATCTAGATGCCAGTGCTCTTTGTATAGACCTTCTACTCTTAGTGTTCTAATATATTTGAATAGCAAAAAATAGAGTTAAGCCAAATATGGTGCTGAAGTATTACAAAAGAAATTCTGGAGGCACCATTTCATGGCAGATTTCATTTTATTCCCTTCAAATAAGATTAAATTAGTTCTTCTTTGTAAACATTAATGCGTGAACATCGTTAGAAGGGCTTTGCTGTATCATCAGTCCTCAAAGGGTGGCAGCACGGTCTATATTTTCAGTGCAATCGTCTCTGCTCTCTTCATTTCATTTCTCTGCTGTACAAGTCTAAGCTCAGGGTAAATAAAGcacttgtttgtttgtgtAAGTGATTCTGACTATTGGACCAATTACAGACTAAAGAAATTGGTGTCACACAGCAGTATGGATGCAAcaattcctgtatctactgtaactgtagattaatccttatGTAAGGACATAATTGAAAGGATTATAACGCTAATCTGTTACACTTATTGTGTTGCATGAAGCACCTACACTTGCAGGGAGTTGGATTATGGCAGGAAGGCAAAACTCAGAAAGACAACTTGCCAAATTGATTACATGCTGCTTTTCACCAGCcctcaaatcaatcaatcaatgtcAAGTATAGGGAGACACAGCCCACATAggtgataataaataaatgctgcaCCTTGCACATCCATGCAGATGCAAATGCCTTAGCTTGTTCCACACATGACATGGACAAAGAAGCTTAAATTCTTAAATTGAAGTGCATTTACCATGTGTGTAGCATTACAGTTTCCCACACATATCTGGGTCATGGCCACATCTGCAAGTATTGATAATGCAAATTTCATCAGGCCAGAGATCCACCATTCGGTCTCACTCACAGTGGCCAGTCGGATATAAAGTAAAGACGCATTCACACAGACCACCTCTCATCTACCTATTCTAGCAAGCAGGGAATATCACTGAATCCAACAGTTGCCACCTACGATTACAATTCAAAAGATGAAAACAACAGTGACAACTTCACATGaagtcaaaataataaataattaatgacaCAAAAAAAGTGAGCATCTCtttacaaaaagaaaaccaACTAAATGACCTATTAGGTCGCCTTTCTTCATTGCGTTACAGTTTGCCAACATTGTCATCTTAAAGGCCATTTCCATGCcataaaatgccaaaaaaaagaaaaaaaaaaaaagaagaagaacgaAAGCAGTCACTTTAGAAAACTGATGGCATAACGATTTTTGATTTGGTATAATCGAGTAACGTCCCCTCCTATAAAATTATGGCTAAAAGGTGTTATACATACATAACTTGTATATGAATAGTAGAATAACTTATGCTGCATGTATTAGTTTGCACTTTTATTgttggtcttggtcttgtttGTTCGGCAATTTAAACGCTAAACCTTTATCGACCCTGCTGAAGGTACTGTTGGTGAACATGTTCAGCTCACTGTCCAGCCAGCCGGCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78159 True 1848 lncRNA 0.38 2 41245137 41247541

Neighbor

gene id symbol gene type direction distance location
wrap73 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 coding upstream 496398 40720804 ~ 40748739 (+)
trnaw-cca_40 NA coding upstream 645075 40599991 ~ 40600062 (+)
LOC103023889 LOC108414619 coding upstream 691986 40543509 ~ 40553151 (+)
LOC103024512 mapkapk2,LOC108414051,LOC107683909,LOC107550950 coding upstream 714144 40512253 ~ 40530993 (+)
LOC111192734 LOC108414049 coding upstream 758563 40483010 ~ 40486574 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding downstream 57769 41305310 ~ 41315208 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding downstream 71184 41318725 ~ 41335582 (+)
nppa NA coding downstream 142078 41389619 ~ 41390496 (+)
LOC103032860 LOC103032860,LOC108432146 coding downstream 148600 41396141 ~ 41398105 (+)
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding downstream 193158 41440699 ~ 41452963 (+)
G57965 NA non-coding upstream 6468 41238321 ~ 41238669 (+)
G57880 NA non-coding upstream 169761 41072386 ~ 41075376 (+)
G57860 NA non-coding upstream 481655 40762338 ~ 40763482 (+)
G57867 tprg1l non-coding upstream 492176 40752502 ~ 40752961 (+)
G57864 NA non-coding upstream 529143 40715510 ~ 40715994 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding downstream 5270 41252811 ~ 41255439 (+)
G57987 NA non-coding downstream 47043 41294584 ~ 41296674 (+)
G58054 NA non-coding downstream 330780 41578321 ~ 41579048 (+)
G58074 NA non-coding downstream 443580 41691121 ~ 41691388 (+)
G58096 NA non-coding downstream 510742 41758283 ~ 41763578 (+)
G57856 tp73 other upstream 564582 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1154866 39967090 ~ 40090271 (+)
G57664 NA other upstream 1198670 40044653 ~ 40046467 (+)
frmd3 frmd3,LOC107678471 other upstream 1874552 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 2091661 39109244 ~ 39153476 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 127148 41374689 ~ 41377445 (+)
G58025 NA other downstream 190486 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 788298 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 961180 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 1287360 42534901 ~ 42576703 (+)

Expression


Co-expression Network