G57987


Basic Information

Item Value
gene id G57987
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41294584 ~ 41296674 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78188
CTGTGTAATTAAAGTGCTGTGCAGATCTCATGAACCTCTTAAATCCATCAGTTTCTTTTGTTGCTACTGTCAGTACAAGGAGCTTCTCTTCAGGAAGGGGTCCCTTCGGCTCACAGTGCAGCGGGGAAAACGCAGTCAACCATAAAAGCCCAAACACCAGAGTTAGCGTTCCAGCCCTCATCTTTAGTCCGCGGCTCCGAGCTCCTCTCTCGGATCTCAGACAGATAAATGTGTACGTGCAGAAACGCTGGAAGTAGAAAGTTAGCTGGAGTTTTATAGCTGTATGTACACAGCCCCTCTATAAACATAGCCTGCCCAGCCGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78188 True 325 lncRNA 0.49 2 41294584 41296674

Neighbor

gene id symbol gene type direction distance location
wrap73 wrap73,LOC107678416,LOC107748967,LOC107710786,LOC107595759 coding upstream 545845 40720804 ~ 40748739 (+)
trnaw-cca_40 NA coding upstream 694522 40599991 ~ 40600062 (+)
LOC103023889 LOC108414619 coding upstream 741433 40543509 ~ 40553151 (+)
LOC103024512 mapkapk2,LOC108414051,LOC107683909,LOC107550950 coding upstream 763591 40512253 ~ 40530993 (+)
LOC111192734 LOC108414049 coding upstream 808010 40483010 ~ 40486574 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding downstream 8636 41305310 ~ 41315208 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding downstream 22051 41318725 ~ 41335582 (+)
nppa NA coding downstream 92945 41389619 ~ 41390496 (+)
LOC103032860 LOC103032860,LOC108432146 coding downstream 99467 41396141 ~ 41398105 (+)
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding downstream 144025 41440699 ~ 41452963 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding upstream 39145 41252811 ~ 41255439 (+)
G57967 NA non-coding upstream 47043 41245137 ~ 41247541 (+)
G57965 NA non-coding upstream 55915 41238321 ~ 41238669 (+)
G57880 NA non-coding upstream 219208 41072386 ~ 41075376 (+)
G57860 NA non-coding upstream 531102 40762338 ~ 40763482 (+)
G58054 NA non-coding downstream 281647 41578321 ~ 41579048 (+)
G58074 NA non-coding downstream 394447 41691121 ~ 41691388 (+)
G58096 NA non-coding downstream 461609 41758283 ~ 41763578 (+)
G58114 NA non-coding downstream 713372 42010046 ~ 42030054 (+)
G58177 NA non-coding downstream 753467 42050141 ~ 42051109 (+)
G57856 tp73 other upstream 614029 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1204313 39967090 ~ 40090271 (+)
G57664 NA other upstream 1248117 40044653 ~ 40046467 (+)
frmd3 frmd3,LOC107678471 other upstream 1923999 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 2141108 39109244 ~ 39153476 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 78015 41374689 ~ 41377445 (+)
G58025 NA other downstream 141353 41438027 ~ 41438911 (+)
ndufa7 ndufa7 other downstream 739165 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 912047 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 1238227 42534901 ~ 42576703 (+)

Expression


Co-expression Network