G58054


Basic Information

Item Value
gene id G58054
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41578321 ~ 41579048 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78281
tatgaaaaaaatgtatgtaagatAATTGCATGAGTTTGAGGCAAAGAATACACTTTTTTTCCCAACTACTCTAGTAGTTTGCTGCACGTTTATCATACTATTAATTATCCTATACCTATTTtcttgtacactgtaaacccatatgttgtttgaactcaaataaattaagtctgttttacataaaattggacatttctaaacaatactcaactatttagagttagttgaacatttgtgggcacatataaacattcaaactgagatctttgagttgaaccaacttataataactgagtttagtctgttgccattggcagcttctttcctattggcttctgtcacaatctatttgcatactgggtgtgtccaacagtttctgattaacactcaccatcagtgtgtaatgaTTCCCCCGGGGCTACCTTAAAAAGAATTTAAGTTCTCCTTCagttgtaataacttgattttctaagttatgctaacttaagtttacattacccattacttaacttttttaaggcaaccggtttcctcaatatcttttaaagtaaactcaacttatccagtcttacagtataacaacaataaaaaagctaaatcaacttcccctttagttgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78281 True 619 lncRNA 0.32 2 41578321 41579048

Neighbor

gene id symbol gene type direction distance location
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 125358 41440699 ~ 41452963 (+)
LOC103032860 LOC103032860,LOC108432146 coding upstream 180216 41396141 ~ 41398105 (+)
nppa NA coding upstream 187825 41389619 ~ 41390496 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding upstream 242739 41318725 ~ 41335582 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding upstream 263113 41305310 ~ 41315208 (+)
plch2 plch2,LOC107691057,LOC107602463 coding downstream 206592 41785640 ~ 41903713 (+)
LOC103035003 LOC108432140 coding downstream 331700 41910748 ~ 41934572 (+)
dpp9 dpp9 coding downstream 368971 41948019 ~ 41977048 (+)
LOC103027292 NA coding downstream 463279 42042327 ~ 42059412 (+)
LOC103027595 NA coding downstream 483250 42062298 ~ 42067929 (+)
G57987 NA non-coding upstream 281647 41294584 ~ 41296674 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding upstream 322882 41252811 ~ 41255439 (+)
G57967 NA non-coding upstream 330780 41245137 ~ 41247541 (+)
G57965 NA non-coding upstream 339652 41238321 ~ 41238669 (+)
G57880 NA non-coding upstream 502945 41072386 ~ 41075376 (+)
G58074 NA non-coding downstream 112073 41691121 ~ 41691388 (+)
G58096 NA non-coding downstream 179235 41758283 ~ 41763578 (+)
G58114 NA non-coding downstream 430998 42010046 ~ 42030054 (+)
G58177 NA non-coding downstream 471093 42050141 ~ 42051109 (+)
G58201 NA non-coding downstream 549142 42128190 ~ 42131034 (+)
G58025 NA other upstream 139410 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 200876 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 897766 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1488050 39967090 ~ 40090271 (+)
G57664 NA other upstream 1531854 40044653 ~ 40046467 (+)
ndufa7 ndufa7 other downstream 456791 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 629673 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 955853 42534901 ~ 42576703 (+)
G58256 ppih other downstream 998144 42577192 ~ 42626114 (+)
G58529 NA other downstream 2081734 43660782 ~ 43661647 (+)

Expression


Co-expression Network