G58074


Basic Information

Item Value
gene id G58074
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 41691121 ~ 41691388 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78306
ATTTTAGTTGAACTTCAAAGACCCatacttttaattttagttgAACTTCTAATACCCATATTCTACATTTTAGTTGAATTTCAAAGACCCATATTCTAAATTTTAGTTGAACTTCAAAGAatcatattatacattttagttgaattttaaatgcccatatttttacattttagttgaACTTCAAAGGCCCATGttgtataatatatgtaaaCTTCAAGaaccatattttacattt

Function

GO:

id name namespace
GO:0050877 nervous system process biological_process
GO:0007600 sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0007608 sensory perception of smell biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78306 True 235 lncRNA 0.25 2 41691121 41691388

Neighbor

gene id symbol gene type direction distance location
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 238158 41440699 ~ 41452963 (+)
LOC103032860 LOC103032860,LOC108432146 coding upstream 293016 41396141 ~ 41398105 (+)
nppa NA coding upstream 300625 41389619 ~ 41390496 (+)
LOC103039684 LOC108432092,LOC107710771,LOC106926566,LOC107691064,LOC102306682 coding upstream 355539 41318725 ~ 41335582 (+)
kiaa2013 kiaa2013,si:dkeyp-104h9.5,LOC107678452,LOC107698843,LOC107595762,LOC107602448 coding upstream 375913 41305310 ~ 41315208 (+)
plch2 plch2,LOC107691057,LOC107602463 coding downstream 94252 41785640 ~ 41903713 (+)
LOC103035003 LOC108432140 coding downstream 219360 41910748 ~ 41934572 (+)
dpp9 dpp9 coding downstream 256631 41948019 ~ 41977048 (+)
LOC103027292 NA coding downstream 350939 42042327 ~ 42059412 (+)
LOC103027595 NA coding downstream 370910 42062298 ~ 42067929 (+)
G58054 NA non-coding upstream 112073 41578321 ~ 41579048 (+)
G57987 NA non-coding upstream 394447 41294584 ~ 41296674 (+)
G57972 mfn2,LOC107748965,LOC107710790,LOC107698839,LOC107678429,LOC107602467 non-coding upstream 435682 41252811 ~ 41255439 (+)
G57967 NA non-coding upstream 443580 41245137 ~ 41247541 (+)
G57965 NA non-coding upstream 452452 41238321 ~ 41238669 (+)
G58096 NA non-coding downstream 66895 41758283 ~ 41763578 (+)
G58114 NA non-coding downstream 318658 42010046 ~ 42030054 (+)
G58177 NA non-coding downstream 358753 42050141 ~ 42051109 (+)
G58201 NA non-coding downstream 436802 42128190 ~ 42131034 (+)
LOC111192688 NA non-coding downstream 674744 42366132 ~ 42422813 (+)
G58025 NA other upstream 252210 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 313676 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1010566 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1600850 39967090 ~ 40090271 (+)
ndufa7 ndufa7 other downstream 344451 42035839 ~ 42053889 (+)
G58211 acot7 other downstream 517333 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 843513 42534901 ~ 42576703 (+)
G58256 ppih other downstream 885804 42577192 ~ 42626114 (+)
G58529 NA other downstream 1969394 43660782 ~ 43661647 (+)

Expression


Co-expression Network