G58177


Basic Information

Item Value
gene id G58177
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42050141 ~ 42051109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78434
tctctcttcccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctctgtcgtccaactccccctccctcagtcgtccaatccccctccctcagtcgtccaaaccCCCTCGCCGCTGCTGCAGCTCTCGCACccctggcgcggcGCCAACTTCGCCTCAGCGCCTCgtttctctcgtctctctcgttTCCCTCTTCCCCTCAGTCGTTCAAACCCCCTCTCTCAGTCATCCTCCTTCTCCATTTCTGCGTTCCTCCTG

Function

GO: NA

KEGG:

id description
ko04740 Olfactory transduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU78434 True 340 lncRNA 0.63 3 42050141 42051109

Neighbor

gene id symbol gene type direction distance location
dpp9 dpp9 coding upstream 73093 41948019 ~ 41977048 (+)
LOC103035003 LOC108432140 coding upstream 115569 41910748 ~ 41934572 (+)
plch2 plch2,LOC107691057,LOC107602463 coding upstream 146428 41785640 ~ 41903713 (+)
mthfr mthfr,LOC107602465,LOC107687111,LOC107691055 coding upstream 597178 41440699 ~ 41452963 (+)
LOC103032860 LOC103032860,LOC108432146 coding upstream 652036 41396141 ~ 41398105 (+)
LOC103027595 NA coding downstream 11189 42062298 ~ 42067929 (+)
LOC103036755 NA coding downstream 25365 42076474 ~ 42077943 (+)
espn espn coding downstream 380381 42431490 ~ 42532518 (+)
LOC103040839 NA coding downstream 548232 42599341 ~ 42611018 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding downstream 712894 42764003 ~ 42767588 (+)
G58114 NA non-coding upstream 20087 42010046 ~ 42030054 (+)
G58096 NA non-coding upstream 286563 41758283 ~ 41763578 (+)
G58074 NA non-coding upstream 358753 41691121 ~ 41691388 (+)
G58054 NA non-coding upstream 471093 41578321 ~ 41579048 (+)
G57987 NA non-coding upstream 753467 41294584 ~ 41296674 (+)
G58201 NA non-coding downstream 77081 42128190 ~ 42131034 (+)
LOC111192688 NA non-coding downstream 315023 42366132 ~ 42422813 (+)
G58227 NA non-coding downstream 355088 42406197 ~ 42406592 (+)
G58265 NA non-coding downstream 560540 42611649 ~ 42613559 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding downstream 577512 42628621 ~ 42649533 (+)
G58025 NA other upstream 611230 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 672696 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1369586 40675040 ~ 40680555 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other upstream 1959870 39967090 ~ 40090271 (+)
G58211 acot7 other downstream 157612 42208721 ~ 42281970 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 483792 42534901 ~ 42576703 (+)
G58256 ppih other downstream 526083 42577192 ~ 42626114 (+)
G58529 NA other downstream 1609673 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 2384749 44435858 ~ 44446503 (+)

Expression


Co-expression Network