G58227


Basic Information

Item Value
gene id G58227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42406197 ~ 42406592 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78497
AGTTGAACATTTTGGCCTAAATATAAAGTGGTTTGTGTATTAgaaacacaccatccccaaagTGAAATATGGTGGTGGCGGCATCATGCTGTAGGGAcaaatgcttttcttcagcagagacatgggaagctggtcagagatgATGAAACAATGGATGGGGCTAAATATAGGGCAaccctggaagaaaacctggtgGAGGCTGTAAAATATTTGAGACTGGGAAGAAGATTCAGTATGGCCCATTCAAAGAGATTCTGTgtcaagacatgaaaattgctgttcacagacgctctccatccaacttggctgagcttgagctgttttataaagaagaatgagcaaaaagcTCTCtatctagatgtgcaaagctggcaaagacaaaccccaaagcacCTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78497 True 396 lncRNA 0.43 1 42406197 42406592

Neighbor

gene id symbol gene type direction distance location
LOC103036755 NA coding upstream 328254 42076474 ~ 42077943 (+)
LOC103027595 NA coding upstream 338268 42062298 ~ 42067929 (+)
LOC103027292 NA coding upstream 346785 42042327 ~ 42059412 (+)
dpp9 dpp9 coding upstream 429149 41948019 ~ 41977048 (+)
LOC103035003 LOC108432140 coding upstream 471625 41910748 ~ 41934572 (+)
espn espn coding downstream 24898 42431490 ~ 42532518 (+)
LOC103040839 NA coding downstream 192749 42599341 ~ 42611018 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding downstream 357411 42764003 ~ 42767588 (+)
trnar-ucg_3 NA coding downstream 432246 42838838 ~ 42838910 (+)
ogg1 ogg1 coding downstream 456361 42862953 ~ 42873055 (+)
G58201 NA non-coding upstream 275163 42128190 ~ 42131034 (+)
G58177 NA non-coding upstream 355088 42050141 ~ 42051109 (+)
G58114 NA non-coding upstream 376143 42010046 ~ 42030054 (+)
G58096 NA non-coding upstream 642619 41758283 ~ 41763578 (+)
G58074 NA non-coding upstream 714809 41691121 ~ 41691388 (+)
G58265 NA non-coding downstream 205057 42611649 ~ 42613559 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding downstream 222029 42628621 ~ 42649533 (+)
G58444 NA non-coding downstream 763549 43170141 ~ 43172830 (+)
G58454 NA non-coding downstream 914164 43320756 ~ 43326039 (+)
G58460 NA non-coding downstream 939793 43346385 ~ 43349871 (+)
G58211 acot7 other upstream 124227 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 352308 42035839 ~ 42053889 (+)
G58025 NA other upstream 967286 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 1028752 41374689 ~ 41377445 (+)
G57856 tp73 other upstream 1725642 40675040 ~ 40680555 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other downstream 128309 42534901 ~ 42576703 (+)
G58256 ppih other downstream 170600 42577192 ~ 42626114 (+)
G58529 NA other downstream 1254190 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 2029266 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 2172488 44579080 ~ 44583918 (+)

Expression


Co-expression Network