G58265


Basic Information

Item Value
gene id G58265
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42611649 ~ 42613559 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78562
ataaactaaacacatactttgcgctgcacagcggggtggtgttctcggagatgggagaacaggttttgacgtatgtccacctttagctgtgactttacggccacattgattacaaatcggataaccatcctgcgttcggcgggtatccgaaatagtcccacactgctgatttagtttagccttttttaggcggacggagatttgtttagtctgatgcactttctgttgttctcaccgctgtgtgccgAGTAGCTGAAACGGAcaagagttgcgcatgcgcggtgGAGTTTCTCTCTCCgcctggcttgcgttttaccggtaataagcaaacacacacggtatgataaccgtgcattttaataccatggtataccgtgaaaccggttaccgctgcaaccctaaatGCCACTGTAGTGAAAGTAGTGAACCACTgacagctaaataaataaataaataaataaataaataaatatagatcTGTATGATGCTGCTGTAACTTTAAGGGTACATTTGGAACATGTTTGGACTTTGTaataaaaagaaggaaaaaaatgtatatattttcatactGACAGTGTATCAACCTAAAGAAAAGCCCTAATAAATGTTGATTTGCAGAGTAATTATTAATTTGGAGTAACTAAcggtcattgtttttttttttttatactaaacaAATGTAGGTTATTTTACCAATGTAAACAAAAGGAAAGGAAATGGGTTAggaaaatgttgggtttaataCCTGAAGTAAGATTGTCAATTATCTACAGTATACAATGTATAGCTCCTGGAGTTAATTGCTCTGACAGGACCATAAATGATACATGGGGTTAAACAAACCATCCTTACCGAGTTTAacaaacatgcatttttttgcTACTGATGTTTTCATATCAGATTATTGAGCTTTATTCTGTTCCGTAAGTTACTGGACCTGCCCGTCTATGAGGATGAAGCTTTTAACAGCACTTCAATAAAGCAGACATCCAGAAGAGAAACAACAAACTAAGCCAAACTACATAAAAATGcaagaccctgtttacaccccTCACTTTATGCATTTATCAGGATTTAGGGCTACACAGAATTGTGGGGAGAAAAATGCAATTGTATTTCTtctgcacattgcAATATTAAAGGTCCCATTCCATCgtcttttcattcattttcattcaaaATGTCTAGTTTGTGAGAagttttttgggaaaacagtgctcaggtgtttctatttagccctgctttagttcactgaattcGTGATCTCTGATGAAGGACAGGTAtttgggctcttgctcatgaatattataTGAATATCATAATATAATGAGTTGATCCGTGTTACAATCGACCCACTGCACAATCTTGTACACTTAGCACTCAGACAACACATACCAAGAAGTGGCGGCCAGGTGAGAAGAGTGTACTCAATCGGAAATGCTTTAGAGAGGATAAGTGCTCGAAACTGTGCAAAACATCTACAAGGCTTCACCAGAAAATACCAGATTTTTGCAAACAAATGTTATTGCAAATCTTTTATGGGGTTTCGTTTTAAATTTATGAGGTAAACACAATGGGTAAATGTGTCTCAATCAAGTTCCAAGTCACCACTAATGATTCACAAATCACAGTTGTCTGGTGGCCCACCCGTCTGTCTACCAACTGACTCAACCCAACCGGCGAGATGAACTTTGTCATGCTTTACAGCCTGTCAAAATATTTGCATTATCAACGTACTTTGCAATACAGGGGCATAATCTTAAGATTGCCCATATTTTAGCCTTTTTAGAATATGTGTTCTTGAggacattaaataataaaaatatttcacagaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78562 True 1840 lncRNA 0.38 2 42611649 42613559

Neighbor

gene id symbol gene type direction distance location
LOC103040839 NA coding upstream 631 42599341 ~ 42611018 (+)
espn espn coding upstream 79131 42431490 ~ 42532518 (+)
LOC103036755 NA coding upstream 533706 42076474 ~ 42077943 (+)
LOC103027595 NA coding upstream 543720 42062298 ~ 42067929 (+)
LOC103027292 NA coding upstream 552237 42042327 ~ 42059412 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding downstream 150444 42764003 ~ 42767588 (+)
trnar-ucg_3 NA coding downstream 225279 42838838 ~ 42838910 (+)
ogg1 ogg1 coding downstream 249394 42862953 ~ 42873055 (+)
LOC103045241 NA coding downstream 301928 42915487 ~ 42947000 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding downstream 432920 43046479 ~ 43057716 (+)
LOC111192688 NA non-coding upstream 188836 42366132 ~ 42422813 (+)
G58227 NA non-coding upstream 205057 42406197 ~ 42406592 (+)
G58201 NA non-coding upstream 480615 42128190 ~ 42131034 (+)
G58177 NA non-coding upstream 560540 42050141 ~ 42051109 (+)
G58114 NA non-coding upstream 581595 42010046 ~ 42030054 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding downstream 15062 42628621 ~ 42649533 (+)
G58444 NA non-coding downstream 556582 43170141 ~ 43172830 (+)
G58454 NA non-coding downstream 707197 43320756 ~ 43326039 (+)
G58460 NA non-coding downstream 732826 43346385 ~ 43349871 (+)
G58542 NA non-coding downstream 1095157 43708716 ~ 43708986 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 34946 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 329679 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 557760 42035839 ~ 42053889 (+)
G58025 NA other upstream 1172738 41438027 ~ 41438911 (+)
LOC103032352 LOC103032352,LOC108432100 other upstream 1234204 41374689 ~ 41377445 (+)
G58529 NA other downstream 1047223 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 1822299 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 1965521 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 1981674 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 2239221 44852780 ~ 44866838 (+)

Expression


Co-expression Network