G58267 (exosc10,LOC107724196,LOC107696929)


Basic Information

Item Value
gene id G58267
gene name exosc10,LOC107724196,LOC107696929
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42628621 ~ 42649533 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78564
catttaaaatttCAATTTAATGAAAGTTCTTTCAAAACATATAGTACAGCATCATGTAGcatgtaagccataattaatttaataaaatgacccacataaaaaaggaaagaaaaaacaacaacaatttaGACAGAAGAAGGTCCCTTAAAAGGGCAAGTGTCCAGCGAAGATTTCTATCTCCTGGGCCAGTTGTggtgaaatcctCTTTCGGACTTGGCAGGCATGCCTCTGCCTCCAGGACCCTGCCTGTGTCCTCTTGGGTTTTTcttCCGTCTGAATTCATTAGACTGTCTGTTTGGGTCAAAGTGTTTGGAGTCATTGGGTTTACCCCCAGCAAAAACTttgaaatctgattggctgtagTCGAAAGGTGTAAATTCAGAAGACTGGTCCTGTTTAGATTCTTCAGTCTCTTGCTTCTGGATCTTCTTAGAAGCTGCAGGAGACTGAACTGCAGCGGGTGTCCCTTTATcagttttcatgatttttttgttttgtttaagacTTTCTTCACCAGCTTCACTGGCAACCCGCTCTCTCTTCTGCCCGACCTGCTTCGATCACAATTTGCTGCCTAACAGTACTGACATCCTGCAGGGACTCCTGATAGTTCTTTTTGGCCTTTTGACGTTCCTCTTTAGCTTTCTTGGCCTGCTCTTTAGCATGCTGCTTGGCCTGTTGTTTAGCTTGAGCCTCTTTCTTCTGCTGCTCAATGCTCTGAAGCTTCCAACGGTTACTAATCTCATAAATCTTTGATGAAGGGTCGTATTTAGCATTTTTCGATATGTGAATATCCTTTGAGGGTAAATACATCCGGAAAGGGTTTTCAAAAGATTCCATGATGCTGTGTGCTTTCTGCTGGGCCACAGTCAGATGACCGCTGTCCATTTCCTCTACCTCCgcaaataaagtaatttttgcaGAAGCTGTGAGACCACTTGTGTTGTCATCCTCCGTAAAAAGAACTCCAACTTTGGTATCTGCTTTCCATTCTGTCTTGCAGTAGATTTCACCGGGGATTTGGACAGATGGCAGCATGTTGCTGTGTGCAGAATTCCGGAGGAACAGAAGTTTTTCCCGGGaatacttgattttttttggtctcttctCAGTAAAAGAAAGCTCCATAAGGTCACTTTCAGACACATGAGAGGTATCATGGGGTCCAAACAAAGTAGATTCAGACTTTCTTTTGGGGGTCATCGATTTCTTCTTTTCAGCAGCGACCTCGGCCTTGAGCAGTGGGATTTCCCTCGCTTGCTTGATGAACTGATGAAGTTCGTTGATCTGCTGCCGCACTAGAGGTGGAGTGGGATTACAACATGCGATGATTCCCTGGGGTTCCTTGGGCAGCTCCTCAGCGATCTTCATCATCATGTGGTTTGGCAAGATATACcCAGTGCTTTCATCCTCTGATCTAGCCAGTTTATCTCTCCAGGCATAGAGCAGACGGAAGGCAGCCAGCTGCTGACTGTTGAAGCTTTTCTTCTGTCTTCTATAAAGCTCCATATAAGATTCCTCAGTGAAGATGGGCTTTACATATTTCTTGAGGCAGAGATCTTTGCTTTTGGACCAGACCAAGTGTATCAAGTTAGACTGTCCATTAGCTGCATCACACAGGTCAGCTCTGAGTCGATCATACACATACAGCAGGTAATGGGTATCAGCCTGGGCATACGCCAGCATTTCTTCTGGTAAGGGTCGTATTCTCCAGTCAGCAAGCTGGTAGCGCTTATTCGAGTCCACGTTGCAGTAGAGTTTGAGGAGATGGTCCAACGAGTTCCTGCCAAGGTTCAGGGAGCGAGCAGCGTGGTGGGTATCAAACATGTTGACCACATAGACACCAAAATCTCACTGCGAAGCTCCAGAGTATCAATAATGAAATCCTCCTCCCTCGTGGAGATCTGCATCAAACAAGTGATTCCCAGGAAACTCCTGTAGGAATGGTGCTCAAGGTCCACAGCGAACTCCTTGCTCCTGGTCAGCTTTTCATTCATGTCAACCAGATCCTCTAATGTGTCGATGAACTTGCAGCTTGTTTCTTCCAGAGGTTTAtaaatCTGAGGTTCAGGTTTAATCCTCAAGCTCTCTGACATGACCAGGTGGTCCAGCTCATGCTGGTAAGGGTGAGAGAACATGTCATCCATGTGCTCTTGAGTTCTCAGCTGGTGGATAAAGTCAGCCAGTGCTGGAGGCACATCCAGATCCTCGGGTCTCTCATTCCGCAGCTGTTTGTTTGTGAAATATGAAGACAGCGGCTTTACGGCATTGGGTTTGACGGAGATTTTGGGGATAAAAGGCGTGTTGCTGTTGTccactttatccttgaacttcAGCTGAGGTCTCTGAATGTTCTTGGCATGAAGAAGATGGAAGGTTTCAGTGCTGCGATTCCCACCCTTGCGATTCCAACTAGACACAACAATTTTGGGAGGCTGATAGCCAGCAGGCATCACGGGCTGAGAGCGAGTCACTCCAGAAGCCTCATCCAGCATAATTCCCACTTTCTCCAGGATGACATCATTGGACTCAACGACCAGATCAAAGCGCTCCTCCAGTCCCGTCaatttgtttttgtcatttatgtGTGATCTGCAGCCGTGGTGCTTCATCAGCTGACTCATAcagtGTAAGAGTCGCTCTCCCTGAACAGCACAGAAATCCTGAAACCCAGGAAAACTCCTGTAGAAGTCGAACTCGTCTCCGGGCTGAGGGAGACCCCCGGCCGCCTTGGTGGCGGAGACCACCGTGCCCAGTCCGTGCTTCACAAACGCGTCCACATCTCTAAACCCCGGGCAGAACTCCCCGCTCTCCGCCCCCGGGGCTCCGCTGCCGGAGTCACCGCGGGCTCCAGAGCCGCTCTCTCCGCTCACGGGCGCAGCCATCACTAGCCAGTACACCCCGCGAGAGCAGCGCGGAGCGGAACACGCGCAGAGACCCGTCTTCTTCTCGGGAGTCT
>TU78565
GGACAGAGGTGGGGAAAGGAACTTAAAGAATTTCCTTGGATATCTGAACAGCAGTTTCATTTactactgtgtttttaaaagccGTACCTAATCTAAGCTAAGAGGTATTCGAGCAAAACTACTTCTGCTGTAAACATAACTGTACAACTATACCTTGAGGCAGAGATCTTTGCTTTTGGACCAGACCAAGTGTATCAAGTTAGACTGTCCATTAGCTGCATCACACAGGTCAGCTCTGAGTCGATCATACACATACAGCAGGTAATGGGTATCAGCCTGGGCATACGCCAGCATTTCTTCTGGTAAGGGTCGTATTCTCCAGTCAGCAAGCTGGTAGCGCTTATTCGAGTCCACGTTGCAGTAGAGTTTGAGGAGATGGTCCAACGAGTTCCTGCCAAGGTTCAGGGAGCGAGCAGCGTGGTGGGTATCAAACATGTTGACCACATAGACACCAAAATCTCACTGCGAAGCTCCAGAGTATCAATAATGAAATCCTCCTCCCTCGTGGAGATCTGCATCAAACAAGTGATTCCCAGGAAACTCCTGTAGGAATGGTGCTCAAGGTCCACAGCGAACTCCTTGCTCCTGGTCAGCTTTTCATTCATGTCAACCAGATCCTCTAATGTGTCGATGAACTTGCAGCTTGTTTCTTCCAGAGGTTTAtaaatCTGAGGTTCAGGTTTAATCCTCAAGCTCTCTGACATGACCAGGTGGTCCAGCTCATGCTGGTAAGGGTGAGAGAACATGTCATCCATGTGCTCTTGAGTTCTCAGCTGGTGGATAAAGTCAGCCAGTGCTGGAGGCACATCCAGATCCTCGGGTCTCTCATTCCGCAGCTGTTTGTTTGTGAAATATGAAGACAGCGGCTTTACGGCATTGGGTTTGACGGAGATTTTGGGGATAAAAGGCGTGTTGCTGTTGTccactttatccttgaacttcAGCTGAGGTCTCTGAATGTTCTTGGCATGAAGAAGATGGAAGGTTTCAGTGCTGCGATTCCCACCCTTGCGATTCCAACTAGACACAACAATTTTGGGAGGCTGATAGCCAGCAGGCATCACGGGCTGAGAGCGAGTCACTCCAGAAGCCTCATCCAGCATAATTCCCACTTTCTCCAGGATGACATCATTGGACTCAACGACCAGATCAAAGCGCTCCTCCAGTCCCGTCaatttgtttttgtcatttatgtGTGATCTGCAGCCGTGGTGCTTCATCAGCTGACTCATAcagtGTAAGAGTCGCTCTCCCTGAACAGCACAGAAATCCTGAAACCCAGGAAAACTCCTGTAGAAGTCGAACTCGTCTCCGGGCTGAGGGAGACCCCCGGCCGCCTTGGTGGCGGAGACCACCGTGCCCAGTCCGTGCTTCACAAACGCGTCCACATCTCTAAACCCCGGGCAGAACTCCCCGCTCTCCGCCCCCGGGGCTCCGCTGCCGGAGTCACCGCGGGCTCCAGAGCCGCTCTCTCCGCTCACGGGCGCAGCCATCACTAGCCAGTACACCCCGCGAGAGCAGCGCGGAGCGGAACACGCGCAGAGACCCGTCTTCTTCTCGGGAGTCT
>TU78566
TCTCTATATCCACCGTGAAGGAACTCATCTGTTAACCATACCAGCAAAAACTttgaaatctgattggctgtagTCGAAAGGTGTAAATTCAGAAGACTGGTCCTGTTTAGATTCTTCAGTCTCTTGCTTCTGGATCTTCTTAGAAGCTGCAGGAGACTGAACTGCAGCGGGTGTCCCTTTATcagttttcatgatttttttgttttgtttaagacTTTCTTCACCAGCTTCACTGGCAACCCGCTCTCTCTTCTGCCCGACCTGCTTCGATCACAATTTGCTGCCTAACAGTACTGACATCCTGCAGGGACTCCTGATAGTTCTTTTTGGCCTTTTGACGTTCCTCTTTAGCTTTCTTGGCCTGCTCTTTAGCATGCTGCTTGGCCTGTTGTTTAGCTTGAGCCTCTTTCTTCTGCTGCTCAATGCTCTGAAGCTTCCAACGGTTACTAATCTCATAAATCTTTGATGAAGGGTCGTATTTAGCATTTTTCGATATGTGAATATCCTTTGAGGGTAAATACATCCGGAAAGGGTTTTCAAAAGATTCCATGATGCTGTGTGCTTTCTGCTGGGCCACAGTCAGATGACCGCTGTCCATTTCCTCTACCTCCgcaaataaagtaatttttgcaGAAGCTGTGAGACCACTTGTGTTGTCATCCTCCGTAAAAAGAACTCCAACTTTGGTATCTGCTTTCCATTCTGTCTTGCAGTAGATTTCACCGGGGATTTGGACAGATGGCAGCATGTTGCTGTGTGCAGAATTCCGGAGGAACAGAAGTTTTTCCCGGGaatacttgattttttttggtctcttctCAGTAAAAGAAAGCTCCATAAGGTCACTTTCAGACACATGAGAGGTATCATGGGGTCCAAACAAAGTAGATTCAGACTTTCTTTTGGGGGTCATCGATTTCTTCTTTTCAGCAGCGACCTCGGCCTTGAGCAGTGGGATTTCCCTCGCTTGCTTGATGAACTGATGAAGTTCGTTGATCTGCTGCCGCACTAGAGGTGGAGTGGGATTACAACATGCGATGATTCCCTGGGGTTCCTTGGGCAGCTCCTCAGCGATCTTCATCATCATGTGGTTTGGCAAGATATACcCAGTGCTTTCATCCTCTGATCTAGCCAGTTTATCTCTCCAGGCATAGAGCAGACGGAAGGCAGCCAGCTGCTGACTGTTGAAGCTTTTCTTCTGTCTTCTATAAAGCTCCATATAAGATTCCTCAGTGAAGATGGGCTTTACATATTTCTTGAGGCAGAGATCTTTGCTTTTGGACCAGACCAAGTGTATCAAGTTAGACTGTCCATTAGCTGCATCACACAGGTCAGCTCTGAGTCGATCATACACATACAGCAGGTAATGGGTATCAGCCTGGGCATACGCCAGCATTTCTTCTGGTAAGGGTCGTATTCTCCAGTCAGCAAGCTGGTAGCGCTTATTCGAGTCCACGTTGCAGTAGAGTTTGAGGAGATGGTCCAACGAGTTCCTGCCAAGGTTCAGGGAGCGAGCAGCGTGGTGGGTATCAAACATGTTGACCACATAGACACCAAAATCTCACTGCGAAGCTCCAGAGTATCAATAATGAAATCCTCCTCCCTCGTGGAGATCTGCATCAAACAAGTGATTCCCAGGAAACTCCTGTAGGAATGGTGCTCAAGGTCCACAGCGAACTCCTTGCTCCTGGTCAGCTTTTCATTCATGTCAACCAGATCCTCTAATGTGTCGATGAACTTGCAGCTTGTTTCTTCCAGAGGTTTAtaaatCTGAGGTTCAGGTTTAATCCTCAAGCTCTCTGACATGACCAGGTGGTCCAGCTCATGCTGGTAAGGGTGAGAGAACATGTCATCCATGTGCTCTTGAGTTCTCAGCTGGTGGATAAAGTCAGCCAGTGCTGGAGGCACATCCAGATCCTCGGGTCTCTCATTCCGCAGCTGTTTGTTTGTGAAATATGAAGACAGCGGCTTTACGGCATTGGGTTTGACGGAGATTTTGGGGATAAAAGGCGTGTTGCTGTTGTccactttatccttgaacttcAGCTGAGGTCTCTGAATGTTCTTGGCATGAAGAAGATGGAAGGTTTCAGTGCTGCGATTCCCACCCTTGCGATTCCAACTAGACACAACAATTTTGGGAGGCTGATAGCCAGCAGGCATCACGGGCTGAGAGCGAGTCACTCCAGAAGCCTCATCCAGCATAATTCCCACTTTCTCCAGGATGACATCATTGGACTCAACGACCAGATCAAAGCGCTCCTCCAGTCCCGTCaatttgtttttgtcatttatgtGTGATCTGCAGCCGTGGTGCTTCATCAGCTGACTCATAcagtGTAAGAGTCGCTCTCCCTGAACAGCACAGAAATCCTGAAACCCAGGAAAACTCCTGTAGAAGTCGAACTCGTCTCCGGGCTGAGGGAGACCCCCGGCCGCCTTGGTGGCGGAGACCACCGTGCCCAGTCCGTGCTGTAAAACACCATTAGAGTTCATTAGAGAACTGAGCCGCTAACCCGTCAGAGATTTAACAGCGCTAAGCTAACCGGCTAATGAAAACAGAACCACGAGTCCAgcgttgctgctgctgcaggaggAGCTCCACGCTGCCGCTG

Function

symbol description
exosc10 Predicted to enable 3'-5'-exoribonuclease activity and single-stranded RNA binding activity. Predicted to be involved in RNA catabolic process and ncRNA 3'-end processing. Predicted to act upstream of or within RNA processing. Predicted to be part of nuclear exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human EXOSC10 (exosome component 10).

NR:

description
PREDICTED: exosome component 10

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78564 True 2959 lncRNA 0.48 26 42628621 42649533
TU78565 False 1567 lncRNA 0.51 11 42640052 42649533
TU78566 False 2615 lncRNA 0.47 22 42630338 42649265

Neighbor

gene id symbol gene type direction distance location
LOC103040839 NA coding upstream 17603 42599341 ~ 42611018 (+)
espn espn coding upstream 96103 42431490 ~ 42532518 (+)
LOC103036755 NA coding upstream 550678 42076474 ~ 42077943 (+)
LOC103027595 NA coding upstream 560692 42062298 ~ 42067929 (+)
LOC103027292 NA coding upstream 569209 42042327 ~ 42059412 (+)
angptl7 angptl7,LOC107727987,LOC107594962 coding downstream 114470 42764003 ~ 42767588 (+)
trnar-ucg_3 NA coding downstream 189305 42838838 ~ 42838910 (+)
ogg1 ogg1 coding downstream 213420 42862953 ~ 42873055 (+)
LOC103045241 NA coding downstream 265954 42915487 ~ 42947000 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding downstream 396946 43046479 ~ 43057716 (+)
G58265 NA non-coding upstream 15062 42611649 ~ 42613559 (+)
LOC111192688 NA non-coding upstream 205808 42366132 ~ 42422813 (+)
G58227 NA non-coding upstream 222029 42406197 ~ 42406592 (+)
G58201 NA non-coding upstream 497587 42128190 ~ 42131034 (+)
G58177 NA non-coding upstream 577512 42050141 ~ 42051109 (+)
G58444 NA non-coding downstream 520608 43170141 ~ 43172830 (+)
G58454 NA non-coding downstream 671223 43320756 ~ 43326039 (+)
G58460 NA non-coding downstream 696852 43346385 ~ 43349871 (+)
G58542 NA non-coding downstream 1059183 43708716 ~ 43708986 (+)
G58564 NA non-coding downstream 1362597 44012130 ~ 44012825 (+)
G58256 ppih other upstream 2507 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 51918 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 346651 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 574732 42035839 ~ 42053889 (+)
G58025 NA other upstream 1189710 41438027 ~ 41438911 (+)
G58529 NA other downstream 1011249 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 1786325 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 1929547 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 1945700 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 2203247 44852780 ~ 44866838 (+)

Expression


Co-expression Network