G58400


Basic Information

Item Value
gene id G58400
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 42843930 ~ 42916392 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78729
ATATAGTGAAGCATTGTTTTTAACAAGCATGTGACTAAACACAGGCCTTAGGCTGACAAAccaacccacatgatacataaacGTATGGCTGACAATCACGCGCCACTGACACCTCACTGAAACCCATTGTGTGATTGCATGTTTTCTAACTAACAGCTACAAAATCAGCAGATAGTGCATTTTGCAAACAAtacagtctttctctctgtgcgcGTGAAGGCCTTCACCTGTCAAATGAGGGAGGACATGCGCGCAGGGAGTGAAacactgtctaattactgaaCAAAGCCGTGCTGTTTCTCCAAGGCCAAAAACACCAGCAAATCTTGAGCCATCAGCGAAATCTTCAGCGCTAACACATAACACCATGCATGCTGACAtaagatgattttagcaacgccctATCACCAGGTCTTCACGTCATTTTGGGtttaaaacatggagtcagatcattAGAGGTTCAGAACATTTGTTGAAACTGGTCATTCACCGATCGTTTCTGTGTTCTCCTGGTTCCAgcttttctgtaataaatacttgttttgctttcaacttcaaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78729 True 578 lncRNA 0.41 2 42843930 42916392

Neighbor

gene id symbol gene type direction distance location
mtor mtor,LOC107564227,LOC107727986,LOC107594963 coding downstream 269 42652007 ~ 42843661 (-)
exosc10 exosc10 coding downstream 194402 42628620 ~ 42649528 (-)
ppih ppih coding downstream 217430 42576953 ~ 42626500 (-)
ybx1 ybx1,LOC107595774,LOC107693424,LOC107602459 coding downstream 269841 42566546 ~ 42574089 (-)
LOC103027912 NA coding downstream 432542 42408979 ~ 42411388 (-)
LOC103044736 LOC108432124,LOC108265469 coding upstream 37136 42953528 ~ 42959655 (-)
LOC107197600 LOC108432124,LOC108265469 coding upstream 44884 42961276 ~ 42975778 (-)
LOC103044416 sult1st3,LOC108432121,LOC108265623,LOC108432095,LOC108432118 coding upstream 63074 42979466 ~ 42992376 (-)
LOC103044132 LOC108432121 coding upstream 80584 42996976 ~ 43008234 (-)
LOC103043615 LOC108432095,LOC108432121 coding upstream 100969 43017361 ~ 43029077 (-)
G58394 NA non-coding downstream 231069 42612095 ~ 42612861 (-)
G58387 NA non-coding downstream 279375 42564121 ~ 42564555 (-)
G58236 NA non-coding downstream 519680 42323835 ~ 42324250 (-)
G58208 NA non-coding downstream 730310 42113190 ~ 42113620 (-)
G58191 NA non-coding downstream 761362 42082267 ~ 42082568 (-)
G58411 NA non-coding upstream 6067 42922459 ~ 42935197 (-)
LOC111192735 NA non-coding upstream 36024 42952416 ~ 42953384 (-)
G58430 NA non-coding upstream 176166 43092558 ~ 43092913 (-)
G58470 NA non-coding upstream 219852 43136244 ~ 43139283 (-)
G58476 NA non-coding upstream 252164 43168556 ~ 43169692 (-)
G58022 LOC103032860,LOC108432146 other downstream 1445452 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2087916 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 2664789 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 2724835 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 3281009 39521544 ~ 39562921 (-)
G58435 aaas other upstream 186478 43102870 ~ 43107623 (-)
G58537 NA other upstream 765932 43682324 ~ 43682684 (-)
G58649 NA other upstream 1451508 44367900 ~ 44368368 (-)
G58678 NA other upstream 1557767 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1669914 44586306 ~ 44622074 (-)

Expression


Co-expression Network