G58435 (aaas)


Basic Information

Item Value
gene id G58435
gene name aaas
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43102870 ~ 43107623 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78780
GCAAATCAATGAGGATATCAAAGTTTATTAGTTTGTGCAAACAGTAGTAAACCATAGGCATATGTTGAGATATGGCAAGTAGTAAGTAGAAAGTAGGAAACAACAAATCATTGTTTAGGAAATCTGTTCTGTGTAGAGCGTGTGTGTAGTACTGTAATCTTCTATCTTGCTGGTGATGTGTGGGAGTGGAGGGCTTCCACCAGTGTGTGGTCTCCCCACACTTACAAAATAGAACGGCACATGAGAAATCCGGCCATTGGACCAGCACACTGTGAGCAATGCACCATGCTGGAAATGAGGATGAAACTGAATCAGTCTAGGCTCTGCTCCAATCTCCCCACTCACAAAGCcaCATGGAAGCAATTCAAAGACTGGGCTGGAGCgtgttttaaacacagctaTAATAGCAGGATGACTGGAGGATCCTGCATTGCCTTTCAGAAGCACAGCCAGTCTCTCTCCAGTGGGATCCCAAGCAAGGGACTGAACCTCTCCCCCAACAATGATATCATCAATCCCACTGAAGGTGGTTTCAGAAAGATCAGCCACAACTGCAGCAGATTTCGG

Function

symbol description
aaas Predicted to be involved in nucleocytoplasmic transport. Predicted to be part of nuclear pore. Human ortholog(s) of this gene implicated in achalasia and triple-A syndrome. Orthologous to human AAAS (aladin WD repeat nucleoporin).

NR:

description
PREDICTED: aladin isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78780 True 567 TUCP 0.46 5 43102870 43107623

Neighbor

gene id symbol gene type direction distance location
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 14999 43063287 ~ 43087871 (-)
LOC103028227 LOC108432121,LOC108432118,LOC108432095,LOC108265470,LOC108265625 coding downstream 62884 43030331 ~ 43039986 (-)
LOC103043615 LOC108432095,LOC108432121 coding downstream 73793 43017361 ~ 43029077 (-)
LOC103044132 LOC108432121 coding downstream 94636 42996976 ~ 43008234 (-)
LOC103044416 sult1st3,LOC108432121,LOC108265623,LOC108432095,LOC108432118 coding downstream 110494 42979466 ~ 42992376 (-)
LOC103021400 NA coding upstream 45337 43152960 ~ 43161328 (-)
LOC111192716 NA coding upstream 53612 43161235 ~ 43162382 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding upstream 79637 43187260 ~ 43340380 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding upstream 237876 43345499 ~ 43366461 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 350736 43458359 ~ 43539305 (-)
G58430 NA non-coding downstream 9957 43092558 ~ 43092913 (-)
LOC111192735 NA non-coding downstream 149486 42952416 ~ 42953384 (-)
G58411 NA non-coding downstream 167673 42922459 ~ 42935197 (-)
G58400 NA non-coding downstream 186478 42843930 ~ 42916392 (-)
G58404 NA non-coding downstream 229110 42872653 ~ 42873760 (-)
G58470 NA non-coding upstream 28621 43136244 ~ 43139283 (-)
G58476 NA non-coding upstream 60933 43168556 ~ 43169692 (-)
G58475 NA non-coding upstream 62511 43170134 ~ 43171136 (-)
G58490 NA non-coding upstream 171169 43278792 ~ 43335618 (-)
G58509 NA non-coding upstream 266713 43374336 ~ 43395114 (-)
G58022 LOC103032860,LOC108432146 other downstream 1704392 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2346856 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 2923729 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 2983775 40117789 ~ 40119095 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other downstream 3539949 39521544 ~ 39562921 (-)
G58537 NA other upstream 574701 43682324 ~ 43682684 (-)
G58649 NA other upstream 1260277 44367900 ~ 44368368 (-)
G58678 NA other upstream 1366536 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1478683 44586306 ~ 44622074 (-)
G58868 NA other upstream 1953486 45061109 ~ 45061674 (-)

Expression


Co-expression Network