G58460


Basic Information

Item Value
gene id G58460
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43346385 ~ 43349871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78815
AAAcagacacaaacaaaacaaacaaacaaacaaacagacaaacaaccaAAAGGCTCCACATGCACAAGGCTCTGAAACTCATAGCCTTCACTCTACAGGGCTGTGGACAACGGCGGCCGCAAGAAAGCCACGACTTACAAGCATTTTCACTCGACATGTCCAAATGTTCACAAAATctcattcaaaaataaaataaaacctaaactaaactaaatcctCTCCTCGTCTTGAGTTTACTTGACTCCCTGACAACCTGAACCCACTCGTTTAGAGACGTGACACTTCCGTATTTCGAGAGGTAAACTGCCTTAAAAAGGTTATTGCTTTTGCCTATTACACAGTGGAGAAATGTTGGAAGCAGAGAAGCAATGGAAGACTTCAAGATTTCCTTTTCTTTAAAACTAATATCAGTGTTCATAAACTACCTGAAGTAAGTCAGCTTTAATAAAAGGATAAGCTGCAAATTCAAAAAGTAGTCCCACAACCTTCCATGTAAACACTTCTTTTCAATTATTCTACACGGCCCACGACGACTCCCGCTTTTCTGTGAAGACTTGAACAGACAGAGTGAACTTGTATATACGAATCTGTTATAGCTGTCAACTGTGGACAAATAATGCAaatcttttatcatttttaaaatcacTTACAAATATGCAATGAACCTTACCTTTAATTGCCCCATAGCCTATATGTATGCACtgtcttttatataaaaatcaataaatacacCTGACCAGTCTAACAGcaccattttattaatttaaacctcattagaaataaaatagttgAGGCCTTCTATTTGAGTCCCATTAAAGAGCAGTAATATATGATTAGCTTACCCCTTCTAAAAGGAATATGGAATATATGTTTAGACTATTTAAAAACGGTTTTATCTTAAGTGCATgccagattttaaaaaatccccCACCAttcaaaaaacaaaaacaaacaaacaaacaaaaaaaggctAAAGATTGTCACTTTTGAGCCTGTATCAGGAGATACTGAGAGATAATGCTTCATTTCTGTCTCTGACCCTGCTAGAAACGTGTGATTTGTTAAGAAAACTGAAAACACTAATGAACTCTCTCAGGAGAAAACATCATTACAATAATCCCTATAAAATGTTGATCAGAGCCAACTGTCAACACGAGGTTTCATCAGATTCTGCTTAACTGTGTATTTAGTGTCCAAAgacggagagatggagagagtaaCACATATCCACTGTAGAAATTTGAAGGCACTAGAATGACTAGAAAAGTCTTCTGTACacttcttaaataaaaaaacacgcTGCAACTCTTCTTTATCCTTTATACCTAGATGGAGCTGTGATTTGGCTTCTTCAGTAGTAAGTTTTATACATACAGTGGGGAAAATGAGTATTTGATAAACTTCAGATTTTGCAagttttccaccaacaaagaaTGGAGAGGTCTGTAATTTTTATCGTAGGTACACTTAAACTGTGAGacacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78815 True 1489 lncRNA 0.36 2 43346385 43349871

Neighbor

gene id symbol gene type direction distance location
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 66788 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 207270 43109418 ~ 43139115 (+)
aaas aaas coding upstream 238755 43093419 ~ 43107630 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding upstream 288669 43046479 ~ 43057716 (+)
LOC103045241 NA coding upstream 399385 42915487 ~ 42947000 (+)
LOC103030075 NA coding downstream 1098561 44448432 ~ 44529452 (+)
LOC103027244 NA coding downstream 1185998 44535869 ~ 44540982 (+)
LOC103027865 NA coding downstream 1205542 44555413 ~ 44567511 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 1285855 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 1488558 44838429 ~ 44839196 (+)
G58454 NA non-coding upstream 20346 43320756 ~ 43326039 (+)
G58444 NA non-coding upstream 173555 43170141 ~ 43172830 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding upstream 696852 42628621 ~ 42649533 (+)
G58265 NA non-coding upstream 732826 42611649 ~ 42613559 (+)
LOC111192688 NA non-coding upstream 923572 42366132 ~ 42422813 (+)
G58542 NA non-coding downstream 358845 43708716 ~ 43708986 (+)
G58564 NA non-coding downstream 662259 44012130 ~ 44012825 (+)
G58577 NA non-coding downstream 743053 44092924 ~ 44093145 (+)
G58587 NA non-coding downstream 830354 44180225 ~ 44180508 (+)
G58588 NA non-coding downstream 836068 44185939 ~ 44186341 (+)
G58256 ppih other upstream 720271 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 769682 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 1064415 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 1292496 42035839 ~ 42053889 (+)
G58025 NA other upstream 1907474 41438027 ~ 41438911 (+)
G58529 NA other downstream 310911 43660782 ~ 43661647 (+)
LOC111192736 NA other downstream 1085987 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 1229209 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 1245362 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 1502909 44852780 ~ 44866838 (+)

Expression


Co-expression Network