G58470


Basic Information

Item Value
gene id G58470
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43136244 ~ 43139283 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78829
TCAGCAGTGCCAATCAGTCTCTGCTCTAACTGATTAGAAGTGGGAGAAAATATCGATATTGCGAtacagtttttagatttcagtcTGCGATACATTATTATCGATACGTGGCGTCAAATAGGGATATTGTTATTAAAACATAGCCCCTCCCCAAATCTGACAACACACTGCGAGATCATGGTCATCGTGCCCGACGTATCGTGATGGTATTGTATCGTGAGATGGCTTGTGACATCCACCCCTTATATTTACACACTTTCTCTCCATATGAACTCTAACCTGCATCTGTGTGAACGGTGAACTAGTGGAAAGTCGGGAACTAAACTGACATTTTAGTGGCGTgtaatgaagttttttttttattattattgcctaaaaaaattatttgcaatgtaataataataataattataattattgcaAAACAACAAAGCTAGCACAGGTTTGAGAGACAATATTATTATGATGTCTATTAGCTAGTATCTATGGCTTCAGTCTGGACTATGAAGGAGTCCATCTCCTGATTTGCATTTCTTCAGGAGACTACATTGTCCAAAATCCTTGGCTACGCTATTTGATCATGCAGAACCTTTATTCTACAGCAATGAAGGAAAAGATGATTCTGTTCCACAAATCAGTCACATGGTACAGCTGAGGACTGGACCGGATTAGAGGGAGAATCTACAGCTTGTGTTTCAATATCATCACTTTCATCTAATGAGCACAACAATACTCTAATTCCCAAACTGCTCAGGACACTCAGCACTGTAATACCTTTACTCATCCCGAAGCACATGCTAGTGTCCACGTTTGCACAGTTAGTGTGTGCTCAAGAGTGAGAAGTGCTGTGTTTATCATCCAGTTCACACTACAAAAATAACATAGTTCTTTACCAGAGAAATCAGCGGCACTTTCTTTCGGTTCCAGTCCTCCGAGGTCAGCCGTTAGTTCTGTAATATTTACTGAATACAGCCTGAGCTTAACTTCCATAAGGTGCCAAaggtttgttcatagcagtgtgtgtgtgtgtgtgtgtgtgtgtgacaaagAGAGACATGTGTCAGGGATGTTTAGAGGATTACTGCAAAAATTAAAAGGCAATATCTGAacatacactaaaaaaaataagttctaTATGACAAATGATGTCACTAATTCAATCAATTCAATCAAAAGACATTTCATGAACTGTTACCTGTTACCTCGGCATAATATTAAACTGGTGATggaacaaaacagaaatatttcaatgcatttttttgctttcattaaaatggaatattctTTGGATCTAAcagatttaatcattttaatgctGAGATATTTTGCTCCGTATATCAACACCACGGTATATTTTTTTGAGTGTGCATTACTGTGCAGTACAAAGAGAccaccattttatttatttcatttccaTCCAAAATGGCCTAGTTGTTTATATTTCAGGATCAGAAAAAAGACACTTTACTGAGTACCACAGAGAAGCCTCAACATTTTTACGCATATCAAACGTTTCAATATTTAGTATGAGTTTACTCTTTACTACatccttatatattttttcttccgTTCCTTTCTTTTATTCACAGACAGTTTTGCTAATAATtctaaaacataattaattttcatgacttttccatgtctttGTGGACAATTTTACTgaccatatattttttagtacAGACATGgcaagaaacaaaaaactaaaaatccaaGTAGGCATAAAATGAATTGAAAGCTGTTTGAAATGTCACGTTTTactagctgaataacatttctgcatattttgcatagcattaaaacagcattttctCTTACTGAGTGAATTTACAGCTATAATCAAGGCTGAAGAGGACCCATATAGACAGATAGCTAAAGCGAAGGGATGTGACAGATTTATCCAaacaattcattatttttaaaaaccaaaacggacaataaactgaaacaatttccatgactttttcaaaactttctgggtatttttcttttttccaaaaCATATCCAGGCCTGgcaattgttatttttaaactccatgacttttccatgtttttcatgaccgtacgacCCCTGTTAAAGGACATTTCCCTCACTTCCACAATTTAGATACACTGCTGTATCGATGCTGAGATCTGGACTCTCGCCTGtgagaacagcagcagctccacaTCCTGTCAGACTCACATAGTTATCTTTAAAGAAAGCAAAtgttaaatactgtttaaatactgtttaCAGTTCTAGCAGGAGccttatttctctctgtctctatctaaccTTCTCACAAATCGCTCATAAAAACATCAAATTATAAGCGTTTTCACTAAAAAGGATATAAATAATAGGTGGTCTCTGACTTCTGCACAGTAATCTAATACAAATATACAGACAatacactcccacacacacacagacacattcctgcacacacacacacacacacacacaccagGACAGTCACAGGGGGAGGAATGTTGGAGGTCTGGGCAGGAATGaggtatactgtatgtatactgAGGCTGGCGTGTGCAGGTAAGGGGCGTGGCTTgtgaaataacacaaaatatgAAAAGCAGCTTAGCCTCTCATCTCataaaaacaaaggcaaataaaagaaaaggatgCCCTCCCTGTAGAGTCTTCCAAGATGCCGCCTGGTTGACCGTGTTTGAGTGTCCTCTTCCTCTACAgaagaacagcagcagaaccTTGTATCTCCCAGCTGCAGATACCCCTCTTCTACCATCAGGAGGTCGTGTTGTGATATTCCTCTCAACTGAAGTTTCTAATTCGGATTGTAGATTGTGTGGAGTAGTGTAGAATTGTCTCAGCAGACGAACTCCTTCCCATCCGTCTATCGGTGCAAAGATTCAGCTTCTTCTTCCTCCGTCGTTTTTCCTAGACTCTTTAGCTTCTTTAGATGGGGTGAAGTATTCTGTTTGTGCATTACGTGCGTTATCATCAGCCTTCttcttaaaacaaaacactCTGTCGGCGGGACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78829 True 3003 lncRNA 0.38 2 43136244 43139283

Neighbor

gene id symbol gene type direction distance location
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 48373 43063287 ~ 43087871 (-)
LOC103028227 LOC108432121,LOC108432118,LOC108432095,LOC108265470,LOC108265625 coding downstream 96258 43030331 ~ 43039986 (-)
LOC103043615 LOC108432095,LOC108432121 coding downstream 107167 43017361 ~ 43029077 (-)
LOC103044132 LOC108432121 coding downstream 128010 42996976 ~ 43008234 (-)
LOC103044416 sult1st3,LOC108432121,LOC108265623,LOC108432095,LOC108432118 coding downstream 143868 42979466 ~ 42992376 (-)
LOC103021400 NA coding upstream 13677 43152960 ~ 43161328 (-)
LOC111192716 NA coding upstream 21952 43161235 ~ 43162382 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding upstream 47977 43187260 ~ 43340380 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding upstream 206216 43345499 ~ 43366461 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 319076 43458359 ~ 43539305 (-)
G58430 NA non-coding downstream 43331 43092558 ~ 43092913 (-)
LOC111192735 NA non-coding downstream 182860 42952416 ~ 42953384 (-)
G58411 NA non-coding downstream 201047 42922459 ~ 42935197 (-)
G58400 NA non-coding downstream 219852 42843930 ~ 42916392 (-)
G58404 NA non-coding downstream 262484 42872653 ~ 42873760 (-)
G58476 NA non-coding upstream 29273 43168556 ~ 43169692 (-)
G58475 NA non-coding upstream 30851 43170134 ~ 43171136 (-)
G58490 NA non-coding upstream 139509 43278792 ~ 43335618 (-)
G58509 NA non-coding upstream 235053 43374336 ~ 43395114 (-)
G58510 NA non-coding upstream 307233 43446516 ~ 43446724 (-)
G58435 aaas other downstream 28621 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 1737766 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2380230 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 2957103 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 3017149 40117789 ~ 40119095 (-)
G58537 NA other upstream 543041 43682324 ~ 43682684 (-)
G58649 NA other upstream 1228617 44367900 ~ 44368368 (-)
G58678 NA other upstream 1334876 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1447023 44586306 ~ 44622074 (-)
G58868 NA other upstream 1921826 45061109 ~ 45061674 (-)

Expression


Co-expression Network