G58490


Basic Information

Item Value
gene id G58490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43278792 ~ 43335618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78851
ccacggtatccagggtaatgtcagcataccaccaagaaggaccaaccacatccaacaggattaactgtggatgcaagaggaagctgtctgcacctcaactctcctgtttccaccagaactgtccgtcaggacaataaattattgtggtctaaaaccaggtgtttcagtttcattgtccaacccctgtatataggCTTCTGTGAATGCAGAATTTACATTTTAGATGTCATACTGTATAGAAAATGCTCTGATATTATCTGTCTAATATTGCAGCATATTTTTGCACGACTAAAACTCAACATTTCAAGAAACTACACAATAAATTGCAATCcctgaaataaataatgaacccttttttgctttaaacaaactaaaagacCATAATCTATTCATAATGTCTTACCACTGGATTGAGTGTCCTGTGTCTAATGGTGTCCCTTGGTATATTTTGGTGAAGGcactacatttattttactacagtTACATGTTTATTATGACCACTCAAAGTGAAAGTAGAATAATCTAGCCCATATCAAGAGCACAGTTTAAAAGGCTAGAGAAAGAGTTTTGTAGATTTGTagttttatacaaataaaattcCATTGTAGTCATTGTGTCTTTTATTCAGATATCTCTATCTTCCTAACCCCTCCAGCTGGGCTCACTACGTATTAATGACGTAAATCAGAATTGCACAAAAGAGGATATCTCTGAGTTCCCCATCATTTATATCACACTTAATGAAATGTGTTGGGGTTGGGACGGATCATCATAACTACTTTCTTTAGGGAATAGGCTCCTCCTTTAAACTCCGCCCAGTAAACTCCATCCTGGTAGCGGCTGCGGTAGTGTCCTCCCCGGTACCACACGCCGTTCAGGTTCGAGTGGGCGCAGGCATTATACCACCAGCCTCCTTTCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78851 True 921 lncRNA 0.40 3 43278792 43335618

Neighbor

gene id symbol gene type direction distance location
LOC111192716 NA coding downstream 116410 43161235 ~ 43162382 (-)
LOC103021400 NA coding downstream 117464 43152960 ~ 43161328 (-)
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 190921 43063287 ~ 43087871 (-)
LOC103028227 LOC108432121,LOC108432118,LOC108432095,LOC108265470,LOC108265625 coding downstream 238806 43030331 ~ 43039986 (-)
LOC103043615 LOC108432095,LOC108432121 coding downstream 249715 43017361 ~ 43029077 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding upstream 9881 43345499 ~ 43366461 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 122741 43458359 ~ 43539305 (-)
LOC103023596 NA coding upstream 228114 43563732 ~ 43638989 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding upstream 583611 43919229 ~ 44038635 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding upstream 914379 44249997 ~ 44307835 (-)
G58475 NA non-coding downstream 107656 43170134 ~ 43171136 (-)
G58476 NA non-coding downstream 109100 43168556 ~ 43169692 (-)
G58470 NA non-coding downstream 139509 43136244 ~ 43139283 (-)
G58430 NA non-coding downstream 185879 43092558 ~ 43092913 (-)
LOC111192735 NA non-coding downstream 325408 42952416 ~ 42953384 (-)
G58509 NA non-coding upstream 38718 43374336 ~ 43395114 (-)
G58510 NA non-coding upstream 110898 43446516 ~ 43446724 (-)
G58530 NA non-coding upstream 325160 43660778 ~ 43664015 (-)
G58544 NA non-coding upstream 449097 43784715 ~ 43784926 (-)
G58546 NA non-coding upstream 464218 43799836 ~ 43800041 (-)
G58435 aaas other downstream 171169 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 1880314 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2522778 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 3099651 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 3159697 40117789 ~ 40119095 (-)
G58537 NA other upstream 346706 43682324 ~ 43682684 (-)
G58649 NA other upstream 1032282 44367900 ~ 44368368 (-)
G58678 NA other upstream 1138541 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1250688 44586306 ~ 44622074 (-)
G58868 NA other upstream 1725491 45061109 ~ 45061674 (-)

Expression


Co-expression Network