G58509


Basic Information

Item Value
gene id G58509
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43374336 ~ 43395114 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78873
TTTCTATGAAAGCGCAGCGTAAGTTCTActatagactccaatgctacgtcacctaattacctatccaatcagattttctcttctgctttaaataacgatcactcattcagtaccttgctGCATTTCAGACGCTGTTGGTCGCtcttcccctcctccctccccgccgcctccaggttggtcccgtttggttgcccgggggttggctccgccctgtcttcagtgtacgacaggatctgcagagcccagatgtatcaagccctgggccgatgacgggcctacgccaaagactctaatacATGAAATCGTTTCTATACGACTTTCACGAACATATACGTGTACTTGTTTCgcctacaaatattttgttcaaacattaaataattcaactaactaaatttgcttccggagtcgtaatagtagaactGTTATTCTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78873 True 431 lncRNA 0.45 2 43374336 43395114

Neighbor

gene id symbol gene type direction distance location
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding downstream 7875 43345499 ~ 43366461 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding downstream 33956 43187260 ~ 43340380 (-)
LOC111192716 NA coding downstream 211954 43161235 ~ 43162382 (-)
LOC103021400 NA coding downstream 213008 43152960 ~ 43161328 (-)
map3k12 map3k12,LOC107711606,LOC107715569,LOC107663586 coding downstream 286465 43063287 ~ 43087871 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding upstream 63245 43458359 ~ 43539305 (-)
LOC103023596 NA coding upstream 168618 43563732 ~ 43638989 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding upstream 524115 43919229 ~ 44038635 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding upstream 854883 44249997 ~ 44307835 (-)
LOC103031368 NA coding upstream 933129 44328243 ~ 44341154 (-)
G58490 NA non-coding downstream 38718 43278792 ~ 43335618 (-)
G58475 NA non-coding downstream 203200 43170134 ~ 43171136 (-)
G58476 NA non-coding downstream 204644 43168556 ~ 43169692 (-)
G58470 NA non-coding downstream 235053 43136244 ~ 43139283 (-)
G58430 NA non-coding downstream 281423 43092558 ~ 43092913 (-)
G58510 NA non-coding upstream 51402 43446516 ~ 43446724 (-)
G58530 NA non-coding upstream 265664 43660778 ~ 43664015 (-)
G58544 NA non-coding upstream 389601 43784715 ~ 43784926 (-)
G58546 NA non-coding upstream 404722 43799836 ~ 43800041 (-)
G58549 NA non-coding upstream 433119 43828233 ~ 43828440 (-)
G58435 aaas other downstream 266713 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 1975858 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 2618322 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 3195195 40165400 ~ 40179141 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other downstream 3255241 40117789 ~ 40119095 (-)
G58537 NA other upstream 287210 43682324 ~ 43682684 (-)
G58649 NA other upstream 972786 44367900 ~ 44368368 (-)
G58678 NA other upstream 1079045 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 1191192 44586306 ~ 44622074 (-)
G58868 NA other upstream 1665995 45061109 ~ 45061674 (-)

Expression


Co-expression Network