G58549


Basic Information

Item Value
gene id G58549
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43828233 ~ 43828440 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78921
AAGGTGTGTCCTTCGAAGGATGGGTAGGCTGCGATGGCAGtactgaaatgggacagtctaccctacggagtatttcctgtttcctgtttgagattctacccgccacaactaaagtcagagctgagaaatgagccagagattttgattctagttttgcttcagaccacaaaataccaaattaattaagtccaggttaattaactgtgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78921 True 208 lncRNA 0.43 1 43828233 43828440

Neighbor

gene id symbol gene type direction distance location
LOC103023596 NA coding downstream 189244 43563732 ~ 43638989 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 288928 43458359 ~ 43539305 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding downstream 461772 43345499 ~ 43366461 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding downstream 487853 43187260 ~ 43340380 (-)
LOC111192716 NA coding downstream 665851 43161235 ~ 43162382 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding upstream 90789 43919229 ~ 44038635 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding upstream 421557 44249997 ~ 44307835 (-)
LOC103031368 NA coding upstream 499803 44328243 ~ 44341154 (-)
LOC103031680 syn1,LOC107667541,LOC107724908 coding upstream 545861 44374301 ~ 44424518 (-)
rasal1 rasal1 coding upstream 881238 44709678 ~ 44771528 (-)
G58546 NA non-coding downstream 28192 43799836 ~ 43800041 (-)
G58544 NA non-coding downstream 43307 43784715 ~ 43784926 (-)
G58530 NA non-coding downstream 164218 43660778 ~ 43664015 (-)
G58510 NA non-coding downstream 381509 43446516 ~ 43446724 (-)
G58509 NA non-coding downstream 433119 43374336 ~ 43395114 (-)
G58568 NA non-coding upstream 154312 43982752 ~ 43983922 (-)
G58570 NA non-coding upstream 183619 44012059 ~ 44012827 (-)
G58574 NA non-coding upstream 239155 44067595 ~ 44070917 (-)
G58583 NA non-coding upstream 306442 44134882 ~ 44135202 (-)
G58642 NA non-coding upstream 495086 44323526 ~ 44324412 (-)
G58537 NA other downstream 145549 43682324 ~ 43682684 (-)
G58435 aaas other downstream 720610 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 2429755 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 3072219 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 3649092 40165400 ~ 40179141 (-)
G58649 NA other upstream 539460 44367900 ~ 44368368 (-)
G58678 NA other upstream 645719 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 757866 44586306 ~ 44622074 (-)
G58868 NA other upstream 1232669 45061109 ~ 45061674 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 2196851 46025291 ~ 46049573 (-)

Expression


Co-expression Network