G58564


Basic Information

Item Value
gene id G58564
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44012130 ~ 44012825 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78939
TAAACTAGAAAAGGCAAagttcgtgaacgaactttaagttggcttgtcaAATAGTTACtaagttgtgtagtgtggtgtggagtgtgtggggtgtggagtgggttgtggagtgtgtttggtgtggtgtgtttggaatgtggggtggagtgtggtgtatgtgtggtggAGTGTGGGGTGAGTTGTGTGTATtaggtgtggagtgtgtgtgttgtggagtgtgtgtggtgtggggtttgtgtggtgtggagtgtgtgtggtgtggggtatgtgtggtttgaagtgtgtgtggtgtggggtttgtgtggtttgaagtgtgtgtggtgtggggtatgtgtggtttgaagtgtgtgtggtgtggggtatgtgtggtttgaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78939 True 376 lncRNA 0.49 2 44012130 44012825

Neighbor

gene id symbol gene type direction distance location
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 732533 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 873015 43109418 ~ 43139115 (+)
aaas aaas coding upstream 904500 43093419 ~ 43107630 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding upstream 954414 43046479 ~ 43057716 (+)
LOC103045241 NA coding upstream 1065130 42915487 ~ 42947000 (+)
LOC103030075 NA coding downstream 435607 44448432 ~ 44529452 (+)
LOC103027244 NA coding downstream 523044 44535869 ~ 44540982 (+)
LOC103027865 NA coding downstream 542588 44555413 ~ 44567511 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 622901 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 825604 44838429 ~ 44839196 (+)
G58542 NA non-coding upstream 303144 43708716 ~ 43708986 (+)
G58460 NA non-coding upstream 662259 43346385 ~ 43349871 (+)
G58454 NA non-coding upstream 686091 43320756 ~ 43326039 (+)
G58444 NA non-coding upstream 839300 43170141 ~ 43172830 (+)
G58267 exosc10,LOC107724196,LOC107696929 non-coding upstream 1362597 42628621 ~ 42649533 (+)
G58577 NA non-coding downstream 80099 44092924 ~ 44093145 (+)
G58587 NA non-coding downstream 167400 44180225 ~ 44180508 (+)
G58588 NA non-coding downstream 173114 44185939 ~ 44186341 (+)
G58606 NA non-coding downstream 310670 44323495 ~ 44332430 (+)
G58607 NA non-coding downstream 311868 44324693 ~ 44400540 (+)
G58529 NA other upstream 350483 43660782 ~ 43661647 (+)
G58256 ppih other upstream 1386016 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 1435427 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 1730160 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 1958241 42035839 ~ 42053889 (+)
LOC111192736 NA other downstream 423033 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 566255 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 582408 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 839955 44852780 ~ 44866838 (+)
G58971 NA other downstream 1776886 45789711 ~ 45790154 (+)

Expression


Co-expression Network