G58568


Basic Information

Item Value
gene id G58568
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 43982752 ~ 43983922 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78956
TTGGCGGCTAAAGGGCGGCTCACGGTGCAGGGAGGCGACCAGATCCTCAACCAGCACGTAACACCGCTGACAGCGTGGCGGTGTCATTAATTATGCAGTCTGGAActgcagagcagagagagagagagagaaaaacacaggatAAGAGAGATGTGGAGCAAAGAAGATGGACAAAAtaaggagagaaaagagaggtgtgtgtgtatgagagcgCTAACCGAAGGAAAAAAGCTAGCACAAGTTAGCACAGCCTGTTTACACTGATAAGACAAAATATAGAAATCCATGAGAAGCTGAAGCAAAAAACTCTGAACTGATCTGTGGTatatgtgggcggggtctcTATCAGACTTtcctccaactcccataatcctCCTGTACCCACTCTATTTATCATACCTcacttcaactcccataatccaccTGCATCCCACTCTATCTagcagacctcactccaactcccataatccacctgcacccaatctatcagacctcactccatctcccataatccacctgcacccactCAATCTATCAGACctcactccaactcccataatccacctgcacccactCTATCTATCAgtcctcactacaactcccataatccaccTGGCCTTACAATGAGCACACTGAccatgtatatgtattttacacTGAATTTGTGTAAAGCATATTTGGCTGCAGTAGCTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78956 True 696 lncRNA 0.46 2 43982752 43983922

Neighbor

gene id symbol gene type direction distance location
LOC103023596 NA coding downstream 343763 43563732 ~ 43638989 (-)
lmx1b lmx1b,lmx1bb,LOC108434405,LOC107723253,LOC107550585 coding downstream 443447 43458359 ~ 43539305 (-)
zbtb34 zbtb34,LOC108412531,LOC107727329,LOC107723248,LOC107727326 coding downstream 616291 43345499 ~ 43366461 (-)
ralgps1 ralgps1,LOC108412534,LOC107669254,LOC107727327 coding downstream 642372 43187260 ~ 43340380 (-)
LOC111192716 NA coding downstream 820370 43161235 ~ 43162382 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding upstream 266075 44249997 ~ 44307835 (-)
LOC103031368 NA coding upstream 344321 44328243 ~ 44341154 (-)
LOC103031680 syn1,LOC107667541,LOC107724908 coding upstream 390379 44374301 ~ 44424518 (-)
rasal1 rasal1 coding upstream 725756 44709678 ~ 44771528 (-)
lrrtm4 lrrtm4,LOC108413329,LOC107713029,LOC107671041,LOC107552197,LOC107714573 coding upstream 1216423 45200345 ~ 45382669 (-)
G58549 NA non-coding downstream 154312 43828233 ~ 43828440 (-)
G58546 NA non-coding downstream 182711 43799836 ~ 43800041 (-)
G58544 NA non-coding downstream 197826 43784715 ~ 43784926 (-)
G58530 NA non-coding downstream 318737 43660778 ~ 43664015 (-)
G58510 NA non-coding downstream 536028 43446516 ~ 43446724 (-)
G58570 NA non-coding upstream 28137 44012059 ~ 44012827 (-)
G58574 NA non-coding upstream 83673 44067595 ~ 44070917 (-)
G58583 NA non-coding upstream 150960 44134882 ~ 44135202 (-)
G58642 NA non-coding upstream 339604 44323526 ~ 44324412 (-)
G58643 NA non-coding upstream 340767 44324689 ~ 44400541 (-)
G58537 NA other downstream 300068 43682324 ~ 43682684 (-)
G58435 aaas other downstream 875129 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 2584274 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 3226738 40748741 ~ 40756014 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other downstream 3803611 40165400 ~ 40179141 (-)
G58649 NA other upstream 383978 44367900 ~ 44368368 (-)
G58678 NA other upstream 490237 44474159 ~ 44477666 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 602384 44586306 ~ 44622074 (-)
G58868 NA other upstream 1077187 45061109 ~ 45061674 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 2041369 46025291 ~ 46049573 (-)

Expression


Co-expression Network