G58577


Basic Information

Item Value
gene id G58577
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44092924 ~ 44093145 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU78970
aacatccctttcagacagcttcctcttgcgtccacagttaatcctgttggatgtggttggtccttcttggtggtatgctgacattaccctggataccgtggctgttgatacatcacaaagacttgcagTCTTGGTCACAgttgcgccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtgtgtctcccataatgttgtgtgcattgcaata

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU78970 True 222 lncRNA 0.47 1 44092924 44093145

Neighbor

gene id symbol gene type direction distance location
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 813327 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 953809 43109418 ~ 43139115 (+)
aaas aaas coding upstream 985294 43093419 ~ 43107630 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding upstream 1035208 43046479 ~ 43057716 (+)
LOC103045241 NA coding upstream 1145924 42915487 ~ 42947000 (+)
LOC103030075 NA coding downstream 355287 44448432 ~ 44529452 (+)
LOC103027244 NA coding downstream 442724 44535869 ~ 44540982 (+)
LOC103027865 NA coding downstream 462268 44555413 ~ 44567511 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 542581 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 745284 44838429 ~ 44839196 (+)
G58564 NA non-coding upstream 80099 44012130 ~ 44012825 (+)
G58542 NA non-coding upstream 383938 43708716 ~ 43708986 (+)
G58460 NA non-coding upstream 743053 43346385 ~ 43349871 (+)
G58454 NA non-coding upstream 766885 43320756 ~ 43326039 (+)
G58444 NA non-coding upstream 920094 43170141 ~ 43172830 (+)
G58587 NA non-coding downstream 87080 44180225 ~ 44180508 (+)
G58588 NA non-coding downstream 92794 44185939 ~ 44186341 (+)
G58606 NA non-coding downstream 230350 44323495 ~ 44332430 (+)
G58607 NA non-coding downstream 231548 44324693 ~ 44400540 (+)
G58609 NA non-coding downstream 247829 44340974 ~ 44425070 (+)
G58529 NA other upstream 431277 43660782 ~ 43661647 (+)
G58256 ppih other upstream 1466810 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 1516221 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 1810954 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 2039035 42035839 ~ 42053889 (+)
LOC111192736 NA other downstream 342713 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 485935 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 502088 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 759635 44852780 ~ 44866838 (+)
G58971 NA other downstream 1696566 45789711 ~ 45790154 (+)

Expression


Co-expression Network