G58610


Basic Information

Item Value
gene id G58610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44366384 ~ 44426975 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79016
tattattattattattattattattattaataaaatatcctCTAAATTTAAagggaatataaatatataaagtatatatatataaagtatatattagGTCACTCGATGCCCTGACTGTAACAAAGATCAAAAGCAAACAtcaaaagaacccagaaaaaAGATTTGTAAGTTCTGGCACACATACAGCATGCAGGTCAGAACCAGCCAGACACAGTTTTTAATCTGGCCAAGAAGGTAAATGTTCTCAACTGTGACTGATATTAACATATAAGATACAAAGCCTAGGCTATAAGAAGAATAGGGTGATTCCTCTGTGGACTTTTTTTTGCTTGGCACAGTCTAATGAGGCTTTGTTGTTATTACACACATGATGTGGCCAAGgctatatttatgtatttattttgacaGAACCAAAAACTTTATTGTTACATGAAATGAGTTTTACGCCTGGTTTAACCTAGACCCAGAGACCCAGACTGACAACTAAACTTAACTTTAAACTTAACTTAACGTTTAAAAATGATCCTTGCCATGCATATAGGATCAAAAGGACTCAATCAGTTCAACAATGTttagctttctacagtaagtaaataacctggcccatgtttctgtttgGACTGGCTGTAAAACCTTTCAGTTGGGATGCCCGCCTCTTGTTTTTGATCAATTGaatgtaatgttgtcatgtgaccactagatggtataGGCAGTGTCCCCAAAAATATCATGGTGCAGagtgcagaaatgtaatgtaactcaTATGTGgacactaatactaatactaatttgTGGACACTAAATACTAATTTCCACCTGTACTAAAAATATAAGTATACTTTCCCTTTTGTTAGGCAGGCTGCAGAGTATTGTATTGTTATCCCTgtgtatgttttgtttattttcgaCTTTTGCCTTGCCTTTATGACCCCTGTCATATACTGACCTTAAACTTAATTGTTTACCCTGGTATATCTAGCCCCTTATGTTTATGCTTTTTGTtgctgaccctgcctgtctgtGTTTACTATGTTGCATGTTattcagtaaagccacttctgTATATCCACACGTCTTATCCTGGTCTGGCTAtgacattttttgtgtttttccaatgcaaataaaataaatatacacatgAGTACCAGTGCATTTGTACATTGTTGTACATTGCGTCCTGAGAGAAGTGCTGTATTTTCTGAAAGAAAGTTGTTAATATTTTGTCTGTTACTACAATTATCTGACATAATTAAGTTTAGTGATGTCTTTAactgtttataaaccaatgaaatcGTTATATATGGGTTAATCTGGTATCCTGGTTTTAATTTCACCTTCAGTATCTTTTTGTTACGACCCCTGGTcgcattgttttttctttgtatgcCCTCTGTGCTGTTTGCATTTAGTTTTTGGTTGTAGGACCATGATTGGCCACCGGGGGCACACTCTATAAAAGGGCAAGAGGAAACCTGACCTGGGAGAGACGTTtagggctcctcccctttcctgACCTGGAACAACTTCCTGCTCAGACCAACCCGGCACCtccattttgtattttatgtgttgctttagtttttgcttcaATATACATTAGTCTTTGGGTAAAATAGGGGGTGAGTGCCATTTTATTTTGCTACCTTTTTCTCCTGTTGTGGTGACGGGGAGTCAGGgtagtttatgtatttt

Function

NR:

description
PREDICTED: excitatory amino acid transporter 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79016 True 1692 lncRNA 0.36 2 44366384 44426975

Neighbor

gene id symbol gene type direction distance location
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 1086787 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 1227269 43109418 ~ 43139115 (+)
aaas aaas coding upstream 1258754 43093419 ~ 43107630 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding upstream 1308668 43046479 ~ 43057716 (+)
LOC103045241 NA coding upstream 1419384 42915487 ~ 42947000 (+)
LOC103030075 NA coding downstream 21457 44448432 ~ 44529452 (+)
LOC103027244 NA coding downstream 108894 44535869 ~ 44540982 (+)
LOC103027865 NA coding downstream 128438 44555413 ~ 44567511 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 208751 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 411454 44838429 ~ 44839196 (+)
G58606 NA non-coding upstream 33954 44323495 ~ 44332430 (+)
G58588 NA non-coding upstream 180043 44185939 ~ 44186341 (+)
G58587 NA non-coding upstream 185876 44180225 ~ 44180508 (+)
G58577 NA non-coding upstream 273239 44092924 ~ 44093145 (+)
G58564 NA non-coding upstream 353559 44012130 ~ 44012825 (+)
G58658 NA non-coding downstream 2997 44429972 ~ 44433476 (+)
G58768 NA non-coding downstream 347287 44774262 ~ 44774597 (+)
G58788 NA non-coding downstream 375851 44802826 ~ 44810711 (+)
G58820 NA non-coding downstream 471714 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 473277 44900252 ~ 44900642 (+)
G58529 NA other upstream 704737 43660782 ~ 43661647 (+)
G58256 ppih other upstream 1740270 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 1789681 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 2084414 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 2312495 42035839 ~ 42053889 (+)
LOC111192736 NA other downstream 8883 44435858 ~ 44446503 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 152105 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 168258 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 425805 44852780 ~ 44866838 (+)
G58971 NA other downstream 1362736 45789711 ~ 45790154 (+)

Expression


Co-expression Network