LOC111192736


Basic Information

Item Value
gene id LOC111192736
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44435858 ~ 44446503 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79086
AGAAGTCACTCCAGTCATTCCATCAACatcagaaagaaagaagGCTGAGAACCAGCATAAGACCGACACTGCAAAGACCTCAGAAAGATCAGGACCATCTTCAAAGAGCGGTCAGAGAAACACAGCAGAGCTTCATTATAATGCTGCAACTGCAAGAAATCCACAGCAAGAGCAACAGGACTCTAACAATTCTGAAGAAGAATTTGTGGACGTTTCTGAAGATTTTATCCCTGAAACGGCAACTGTGATAAAAGGTACACCTTCCACTGATTTCTCTTACCCCTGTGGACCCAGAGAACAGCAGGGTGTACACCCATCAG
>XM_022670962.1
GTTGCCCCAACGTTCAGGATTAGCCTGCACTATATAAAGGAAGCTCTTCCTGGCAGATCATAAGCCAGCACCCTTTGGTGAGGTGAAACTCCAGGTGATGGAGGTGTGAGAGATGAATATGGATcctgaaacaccagcagatgCTCTATCTGCTGGAGGAGCTTTAAGTGTTCCTGAAAGTTCCAGAAATGTTGCTGCAGAAGGCGGGGGGGCAGAGGTCAGGGATGCTGAAGGTGAAACTCCTGCTGCTAAGGCTGTAAGACAGGTGCACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACTGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGATGCTCAGAGAATGCCTGATGGTTCAGGAAATGTTCTTCCAGGGGTCCGAGAAGCTGAAGGAGAATCAGCGGTTGGAGGAGGTTCTACAGAGGTGAAAACAGATCCTCCACCAGGTGCAGACGCTTCAGCAGCTCAGGATGCTAAAAGTACTGCTGCCGTGGGAAAAGCGAACACAAGGCCAAATGAGAGTAAAAACAGGAGAATTAAAGGTGCTGGATGTGTTACAAATGCTCACCCAAAACTTCAGAACAATCCTCAAAGTAAGAGATaacatttccttttttcctgtAGTATTTTTGACATCTTAAGAAGATGTATGGGAAGATGAAGGTTTCAAGCATTTGCagactttttaaattcagtACATTTCAGAATTTAATTCAGAAAGTAACAGCTAAACGGATTTATTGGTTTGTCTTCCTCAGAAGTCACTCCAGTCATTCCATCAACatcagaaagaaagaagGCTGAGAACCAGCATAAGACCGACACTGCAAAGACCTCAGAAAGATCAGGACCATCTTCAAAGAGCGGTCAGAGAAACACAGCAGAGCTTCATTATAATGCTGCAACTGCAAGAAATCCACAGCAAGAGCAACAGGACTCTAACAATTCTGAAGAAGAATTTGTGGACGTTTCTGAAGATTTTATCCCTGAAACGGCAACTGTGATAAAAGGTACACCTTCCACTGATTTCTCTTACCCCTGTGGACCCAGAGAACAGCAGGGTGTACACCCATCAGGCAAGGAACTCATCACAATTAC
>XM_022670963.1
atacacagtTTAGAAGCAATTAGGAAGGCCTGCAGTCAGTTAGATCATTATTTGAGAATGAATAATAATTCTCTTCTTTAGGTGAAACTCCAGGTGATGGAGGTGTGAGAGATGAATATGGATcctgaaacaccagcagatgCTCTATCTGCTGGAGGAGCTTTAAGTGTTCCTGAAAGTTCCAGAAATGTTGCTGCAGAAGGCGGGGGGGCAGAGGTCAGGGATGCTGAAGGTGAAACTCCTGCTGCTAAGGCTGTAAGACAGGTGCACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACTGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGATGCTCAGAGAATGCCTGATGGTTCAGGAAATGTTCTTCCAGGGGTCCGAGAAGCTGAAGGAGAATCAGCGGTTGGAGGAGGTTCTACAGAGGTGAAAACAGATCCTCCACCAGGTGCAGACGCTTCAGCAGCTCAGGATGCTAAAAGTACTGCTGCCGTGGGAAAAGCGAACACAAGGCCAAATGAGAGTAAAAACAGGAGAATTAAAGGTGCTGGATGTGTTACAAATGCTCACCCAAAACTTCAGAACAATCCTCAAAGTAAGAGATaacatttccttttttcctgtAGTATTTTTGACATCTTAAGAAGATGTATGGGAAGATGAAGGTTTCAAGCATTTGCagactttttaaattcagtACATTTCAGAATTTAATTCAGAAAGTAACAGCTAAACGGATTTATTGGTTTGTCTTCCTCAGAAGTCACTCCAGTCATTCCATCAACatcagaaagaaagaagGCTGAGAACCAGCATAAGACCGACACTGCAAAGACCTCAGAAAGATCAGGACCATCTTCAAAGAGCGGTCAGAGAAACACAGCAGAGCTTCATTATAATGCTGCAACTGCAAGAAATCCACAGCAAGAGCAACAGGACTCTAACAATTCTGAAGAAGAATTTGTGGACGTTTCTGAAGATTTTATCCCTGAAACGGCAACTGTGATAAAAGGTACACCTTCCACTGATTTCTCTTACCCCTGTGGACCCAGAGAACAGCAGGGTGTACACCCATCAGGCAAGGAACTCATCACAATTAC
>XM_022670964.1
GTTGCCCCAACGTTCAGGATTAGCCTGCACTATATAAAGGAAGCTCTTCCTGGCAGATCATAAGCCAGCACCCTTTGGTGAGGTGAAACTCCAGGTGATGGAGGTGTGAGAGATGAATATGGATcctgaaacaccagcagatgCTCTATCTGCTGGAGGAGCTTTAAGTGTTCCTGAAAGTTCCAGAAATGTTGCTGCAGAAGGCGGGGGGGCAGAGGTCAGGGATGCTGAAGGTGAAACTCCTGCTGCTAAGGCTGTAAGACAGGTGCACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGTGGACCCTGCACTACTGGCAGGTGCTCCTGCTGCTGAGGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGTGAGACAGGCGGACCCTGCACTACAGGCAGGTGCTCCTGCTGCTGAGGATGCTCAGAGAATGCCTGATGGTTCAGGAAATGTTCTTCCAGGGGTCCGAGAAGCTGAAGGAGAATCAGCGGTTGGAGGAGGTTCTACAGAGGTGAAAACAGATCCTCCACCAGGTGCAGACGCTTCAGCAGCTCAGGATGCTAAAAGTGTAAGATACATTCAAAGTGGAAGACAAGTTCAGGTAGTTACTGTGACATGATGACGATAATAAATCCAATGCTATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79086 False 320 lncRNA 0.45 5 44440050 44446481
XM_022670962.1 True 1365 mRNA 0.49 12 44435858 44446503
XM_022670963.1 False 1364 mRNA 0.48 11 44437065 44446503
XM_022670964.1 False 824 mRNA 0.54 6 44435858 44439670

Neighbor

gene id symbol gene type direction distance location
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 1156261 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 1296743 43109418 ~ 43139115 (+)
aaas aaas coding upstream 1328228 43093419 ~ 43107630 (+)
pcbp2 pcbp2,LOC107663584,LOC107569168,LOC106571954,LOC105026324 coding upstream 1378142 43046479 ~ 43057716 (+)
LOC103045241 NA coding upstream 1488858 42915487 ~ 42947000 (+)
LOC103030075 NA coding downstream 1929 44448432 ~ 44529452 (+)
LOC103027244 NA coding downstream 89366 44535869 ~ 44540982 (+)
LOC103027865 NA coding downstream 108910 44555413 ~ 44567511 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 189223 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 391926 44838429 ~ 44839196 (+)
G58658 NA non-coding upstream 2382 44429972 ~ 44433476 (+)
G58610 NA non-coding upstream 8883 44366384 ~ 44426975 (+)
G58609 NA non-coding upstream 10788 44340974 ~ 44425070 (+)
G58607 NA non-coding upstream 35318 44324693 ~ 44400540 (+)
G58606 NA non-coding upstream 103428 44323495 ~ 44332430 (+)
G58768 NA non-coding downstream 327759 44774262 ~ 44774597 (+)
G58788 NA non-coding downstream 356323 44802826 ~ 44810711 (+)
G58820 NA non-coding downstream 452186 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 453749 44900252 ~ 44900642 (+)
G58823 NA non-coding downstream 454221 44900724 ~ 44901104 (+)
G58529 NA other upstream 774211 43660782 ~ 43661647 (+)
G58256 ppih other upstream 1809744 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 1859155 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 2153888 42208721 ~ 42281970 (+)
ndufa7 ndufa7 other upstream 2381969 42035839 ~ 42053889 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other downstream 132577 44579080 ~ 44583918 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 148730 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 406277 44852780 ~ 44866838 (+)
G58971 NA other downstream 1343208 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 2405861 46852364 ~ 46881891 (+)

Expression


Co-expression Network