G58678


Basic Information

Item Value
gene id G58678
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44474159 ~ 44477666 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79103
GCTGCTTTGATCAACGTGTTTAGATGCGGACTTAACCCAGATGTACAGAGGGaattagcctgcagagatgattcTCTGACTCTGGACCAGCTCATTTCACTGTCGATCCggttggatcaacttctctcACGCCGACCCAAGACCAGTCCTCGCACTCAAAACACTCCTGCGTCTCTGCCCCGCGCTCTGCCCCGCGCTCCCACACCAGAGAAAGCTGCGCCGCTTGCCCCAGAACCCATGGACatccagaaaacccggctaACTCCAGAGGAGCAACAGCGTCGAATCCGGCTTCGCTTATGCCTTTATTGTGGGGAGGCCgggcatttcaaggctgagtgtggtctcctgacccgacccgtgaaagctccagccctgggacagcGCATGACACAATCCTTCGttctaaatgtttttctctACCGGTGAATATTGTTTTGCCTGATGGTTTGCTCTCTGtctcagcgcttgtagattccgggtcggaAGGGAACTTCATCAGTCTGGACCTGGTTAAGGAGCATAACGTACCCACCCGAGAACTTCTACGCCCTCTATCCATCCATGCAGTAGACGGGAAGACGGTTCGCTCTAAACCAGTCACGCTACAAACGCTACCCATCACCCTGCAAGCCAGTGCTCTTCATTTCGAGGAACTGCCACTTTTCGTGCTCCCCTGCACCGAGCATCCTGTTAtcctgggcatgccatggctgaagacccacgatcccactgtctcctggcgcgatggggatatcacgtgcattctgggttaccagcctccgttagctccgtggacagcgtcGTCCACTGAGATCCCCGCTGTtgacgactggatgaagcggagtgagcaggtgtgggaggagacgcatcagCAAATCTCGGAGGTCCTACGGAAatataaggagcagtccgacagacaccgtggtaccaccccccaataccaacccggagacagggtgtggttgtcgacccgggacttgaggtttgagggggcctgtaggaaactgctgcctaagtatattggcccatttaaggTTTTGTCTCAGGTTAACGAGGTGACTTATAAGATAGAGTTGCCAGCTCAGTACAGAGTGCATAACTCGTTCCATGTAtctctgctcaagcctcttgtcccaggtccgcttgctgagggtgttcctgatgacgtgccgcccgcggcagtggagggggaggattcgtctacctat

Function

GO:

id name namespace
GO:0031667 response to nutrient levels biological_process
GO:0009991 response to extracellular stimulus biological_process
GO:0005911 cell-cell junction cellular_component
GO:0005921 gap junction cellular_component
GO:0005922 connexin complex cellular_component
GO:0008528 G protein-coupled peptide receptor activity molecular_function
GO:0004982 N-formyl peptide receptor activity molecular_function
GO:0001653 peptide receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79103 True 1211 TUCP 0.55 3 44474159 44477666

Neighbor

gene id symbol gene type direction distance location
LOC103031680 syn1,LOC107667541,LOC107724908 coding downstream 49641 44374301 ~ 44424518 (-)
LOC103031368 NA coding downstream 133005 44328243 ~ 44341154 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding downstream 166324 44249997 ~ 44307835 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding downstream 435524 43919229 ~ 44038635 (-)
LOC103023596 NA coding downstream 835170 43563732 ~ 43638989 (-)
rasal1 rasal1 coding upstream 232012 44709678 ~ 44771528 (-)
lrrtm4 lrrtm4,LOC108413329,LOC107713029,LOC107671041,LOC107552197,LOC107714573 coding upstream 722679 45200345 ~ 45382669 (-)
mbd4 NA coding upstream 1060144 45537810 ~ 45547163 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 1136700 45614366 ~ 45722134 (-)
tmcc1 tmcc1 coding upstream 1264380 45742046 ~ 45802127 (-)
G58655 NA non-coding downstream 59355 44413427 ~ 44414804 (-)
G58643 NA non-coding downstream 73618 44324689 ~ 44400541 (-)
G58642 NA non-coding downstream 149747 44323526 ~ 44324412 (-)
G58583 NA non-coding downstream 338957 44134882 ~ 44135202 (-)
G58574 NA non-coding downstream 403242 44067595 ~ 44070917 (-)
G58681 LOC108413520 non-coding upstream 13388 44491054 ~ 44493034 (-)
G58733 NA non-coding upstream 152912 44630578 ~ 44630874 (-)
G58758 dtx1,LOC102293283,LOC106585516 non-coding upstream 212950 44690616 ~ 44699500 (-)
G58759 NA non-coding upstream 223365 44701031 ~ 44701240 (-)
G58769 NA non-coding upstream 296671 44774337 ~ 44774596 (-)
G58649 NA other downstream 105791 44367900 ~ 44368368 (-)
G58537 NA other downstream 791475 43682324 ~ 43682684 (-)
G58435 aaas other downstream 1366536 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 3075681 41396086 ~ 41398478 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other downstream 3718145 40748741 ~ 40756014 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other upstream 108640 44586306 ~ 44622074 (-)
G58868 NA other upstream 583443 45061109 ~ 45061674 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 1547625 46025291 ~ 46049573 (-)
G59341 NA other upstream 1705075 46182741 ~ 46186894 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other upstream 2125578 46603244 ~ 46681925 (-)

Expression


Co-expression Network