LOC103028384 (ptges2,LOC107083974,LOC107081068)


Basic Information

Item Value
gene id LOC103028384
gene name ptges2,LOC107083974,LOC107081068
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44579080 ~ 44583918 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79121
ACTGTAACTGTCTTTATTTATCCATTATTTTccattctgtatttttttttctttcccaatAATACAGACACAATCTGCAGGATGATGTGAGACAGGACCTCTACAAGGCTGTAAATGATTGGGTTGCTGCTGTTGGAAAGAACAACAAATTCATGGGAGGAGAGAGTCCTAACCTTGCAGATCTGGCCGTGTTTGGTGTTCTAAGGGTTATGGAAGGTCTTGAGGCTTTCAACGACATGATGGAGAACACCAAAATTAAGCACTGGTACCGACGTATGGAGAAATGTGTACATCATTATCCCAGTCATGCAGAATAAAATACTTCAGGTGTTTCTGTCAAAGAAGTGCAAATTTAAACTGCTAGCAAACTGCTGATGTCTGATTAGCATTATAATTTAATGTACATTGCTTTAAATTGAACGGTTTCTCTTGgattaaattgtttttgttattattttcatAACAACAATCATTTGGCTCTTATTGtctcttgtgtttatttaacattatcatGTCTGTAATGTAAAAAGTTGCAGATGCCAGTCCTGTAAATTGTTACTGGCCCAACTCAAACAAAATAGACACAATATTGCACTTGGTCTTGATTTGCTTATTGAGGAAAATGTGATCCAATAGTacgtcagtgtaaaaaaaatgtgatctcATGCAGCAATAACTGCAACTAAGCATTTCGGGCAACTTGAATAGTCGTGCACATGTGGAATATAAACTTATTTGTTGGTAGGTTCCCTCCCATCAGTCTTTTGCTTCAGGTACTTCCACAACATGTTTATTGGATTAAAGTCAGGACTTTGACCTggccattttaaaacaataacttTATTGTCTTAAACCATTCTGTGGTAGAGCGACTTCTGTGATTAGGGTCATTGTGTTGTTGCTTGACCCACCTTTTCTTAAGGTTGAGCTAACAGACAGATTTACTGAATTTGTTGGTATAATTTAGAATGTATTGTATAATCAATGCCATCTTAgacccagatgcagcaaaaaaaaaaaaacattaccacTACTGTGTTTCACAGTTAAGGTGTagtgttttcctttctccaaaTAAAGCACTTCTCATTTAAA
>XR_002650089.1
ttttctttcccaatAATACAGACACAATCTGCAGGATGATGTGAGACAGGACCTCTACAAGGCTGTAAATGATTGGGTTGCTGCTGTTGGAAAGAACAACAAATTCATGGGAGGAGAGAGTCCTAACCTTGCAGATCTGGCCGTGTTTGGTGTTCTAAGGGTTATGGAAGGTCTTGAGGCTTTCAACGACATGATGGAGAACACCAAAATTAAGCACTGGTACCGACGTATGGAGAAATGTGTACATCATTATCCCAGTCATGCAGAATAAAATACTTCAGGTGTTTCTGTCAAAGAAGTGCAAATTTAAACTGCTAGCAAACTGCTGATGTCTGATTAGCATTATAATTTAATGTACATTGCTTTAAATTGAACGGTTTCTCTTGgattaaattgtttttgttattattttcatAACAACAATCATTTGGCTCTTATTGtctcttgtgtttatttaacattatcatGTCTGTAATGTAAAAAGTTGCAGATGCCAGTCCTGTAAATTGTTACTGGCCCAACTCAAACAAAATAGACACAATATTGCACTTGGTCTTGATTTGCTTATTGAGGAAAATGTGATCCAATAGTacgtcagtgtaaaaaaaatgtgatctcATGCAGCAATAACTGCAACTAAGCATTTCGGGCAACTTGAATAGTCGTGCACATGTGGAATATAAACTTATTTGTTGGTAGGTTCCCTCCCATCAGTCTTTTGCTTCAGGTACTTCCACAACATGTTTATTGGATTAAAGTCAGGACTTTGACCTggccattttaaaacaataacttTATTGTCTTAAACCATTCTGTGGTAGAGCGACTTCTGTGATTAGGGTCATTGTGTTGTTGCTTGACCCACCTTTTCTTAAGGTTGAGCTAACAGACAGATTTACTGAATTTGTTGGTATAATTTAGAATGTATTGTATAATCAATGCCATCTTAgacccagatgcagcaaaaaaaaaaaaacattaccacTACTGTGTTTCACAGTTAAGGTGTagtgttttcctttctccaaaTAAAGCACTTCTCATTTAAA

Function

symbol description
ptges2 Enables lyase activity and prostaglandin-E synthase activity. Involved in lipid metabolic process. Located in Golgi membrane; cytosol; and mitochondrion.

NR:

description
prostaglandin E synthase 2 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79121 True 1095 lncRNA 0.36 2 44579080 44583918
XR_002650089.1 False 1049 misc_RNA 0.36 2 44579126 44583918

Neighbor

gene id symbol gene type direction distance location
LOC103027865 NA coding upstream 11569 44555413 ~ 44567511 (+)
LOC103027244 NA coding upstream 38098 44535869 ~ 44540982 (+)
LOC103030075 NA coding upstream 49628 44448432 ~ 44529452 (+)
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 1299483 43242755 ~ 43279597 (+)
LOC103047068 LOC108412532,LOC103047068,LOC108265240,LOC103370865,LOC100697880,LOC104931656 coding upstream 1439965 43109418 ~ 43139115 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding downstream 51808 44635726 ~ 44692350 (+)
LOC111192718 NA coding downstream 254511 44838429 ~ 44839196 (+)
LOC103029982 NA coding downstream 920173 45504091 ~ 45521326 (+)
creld1 creld1 coding downstream 937855 45521773 ~ 45534629 (+)
ift122 ift122 coding downstream 964224 45548142 ~ 45606522 (+)
G58658 NA non-coding upstream 145604 44429972 ~ 44433476 (+)
G58610 NA non-coding upstream 152105 44366384 ~ 44426975 (+)
G58609 NA non-coding upstream 154010 44340974 ~ 44425070 (+)
G58607 NA non-coding upstream 178540 44324693 ~ 44400540 (+)
G58606 NA non-coding upstream 246650 44323495 ~ 44332430 (+)
G58768 NA non-coding downstream 190344 44774262 ~ 44774597 (+)
G58788 NA non-coding downstream 218908 44802826 ~ 44810711 (+)
G58820 NA non-coding downstream 314771 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 316334 44900252 ~ 44900642 (+)
G58823 NA non-coding downstream 316806 44900724 ~ 44901104 (+)
LOC111192736 NA other upstream 132577 44435858 ~ 44446503 (+)
G58529 NA other upstream 917433 43660782 ~ 43661647 (+)
G58256 ppih other upstream 1952966 42577192 ~ 42626114 (+)
LOC103040535 arhgef16,ybx1,LOC107595774 other upstream 2002377 42534901 ~ 42576703 (+)
G58211 acot7 other upstream 2297110 42208721 ~ 42281970 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other downstream 11315 44595233 ~ 44600960 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 268862 44852780 ~ 44866838 (+)
G58971 NA other downstream 1205793 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 2268446 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 3039636 47623554 ~ 47661357 (+)

Expression


Co-expression Network