snrnp200 (snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067)


Basic Information

Item Value
gene id snrnp200
gene name snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44586306 ~ 44622074 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79140
ACGGAACTGTTTGCGTGACATGCTGCGCGCGTCGTGCGTGCGTTGTGAGTCTTTTGTGCGGGAGAGCAGAAGCAGCAGAACCCGCAACTTTTCTTCTATACCGTACTGCTATCACCCGGCCCCGCAGCTTCCCTCAGCACCCCGCAGCTCCCCGCAGGCCTGTAGCTGTAGCTGTGTGAGCGGTTAGCCCGGGCTCTGAGGATTAGCCGGGGCTTACACTAGAGCTGCAGGATGGCGGATGTTACAGCGCGTAGTCTGCAGTATGAGTATAAAGCGAACTCGAACTTGGTTTTGCAAGCTGATCGCTCTCTCATTGACCGCACTCGCCGAGATGAACCTACAGGCGAGGTGTTGTCTTTGGTTGGGAAACTGGAAGGGACCAAAATGGGAGACAAGAGTCAACGAACGAAGCCACAAATGTTGGAAGAAAGGAGGGCAAAGAGAAGAAAGCGAGATGAAGACAGACATGACATTAacaaaatgaaaggatttaCCCTGCTGTCAGAAGGAATTGATGAGATGGTGGGTATCGTATACAAGCCAAAGACCAAGGAGACCAGAGAAACGTATGAAATCCTCCTCAGCTTCATTCAGGCTGCTCTTGGAGACCAGGCAAG
>XM_022670744.1
AACTGTTTGCGTGACATGCTGCGCGCGTCGTGCGTGCGTTGTGAGTCTTTTGTGCGGGAGAGCAGAAGCAGCAGAACCCGCAACTTTTCTTCTATACCGTACTGCTATCACCCGGCCCCGCAGCTTCCCTCAGCACCCCGCAGCTCCCCGCAGGCCTGTAGCTGTAGCTGTGTGAGCGGTTAGCCCGGGCTCTGAGGATTAGCCGGGGCTTACACTAGAGCTGCAGGATGGCGGATGTTACAGCGCGTAGTCTGCAGTATGAGTATAAAGCGAACTCGAACTTGGTTTTGCAAGCTGATCGCTCTCTCATTGACCGCACTCGCCGAGATGAACCTACAGGCGAGGTGTTGTCTTTGGTTGGGAAACTGGAAGGGACCAAAATGGGAGACAAGAGTCAACGAACGAAGCCACAAATGTTGGAAGAAAGGAGGGCAAAGAGAAGAAAGCGAGATGAAGACAGACATGACATTAacaaaatgaaaggatttaCCCTGCTGTCAGAAGGAATTGATGAGATGGTGGGTATCGTATACAAGCCAAAGACCAAGGAGACCAGAGAAACGTATGAAATCCTCCTCAGCTTCATTCAGGCTGCTCTTGGAGACCAGCCAAGAGACATTCTGTGTGGTGCTGCAGATGAGGTGTTAGCTGTTCTTAAGAATGAGAAGATGAGGGATAAGGAAAGGAGGCGGGAAGTTGAGCAATTGCTTGGACCTACAGATGACACACGCTACCATGTCCTGGTCAACTTGGGCAAGAAGATCTCTGACTATGGAGGGGACAAAGAACTCCAAAATATGGATGAAAACATAGATGAAACCTATGGAGTAAATGTACAGTTTGAGTCTGATGAGGAGgAAGGTGATGAAGACCAGTATGGAGAGGTGCGGGAGGAAGGTTCTGATGACAGCGAGGGAGAGGAAGCAGATGTGGGATGCACACTGTCTGCTAATttGGGGACTGCAGGAGATGTGATGACCACCAAAAAGAAAGACCTTCACCCTAGAGACATTGATGCTTTTTGGCTTCAGAGGCAGCTCAGCCGTTTCTATGATGACGCTATTGTGTCTCAGAAGAAAGCTGATGAGGTTTTGGAGATTCTCAAGACCGCTAGTGATGACCGAGAATGTGAGAATCAGTTGGTGCTTCTGCTGGGTTTTAATACCTTTGACTTCATTAAGGTGCTACGCCAGCACAGGCGCATGATCCTCTACTGCACCATGTTGGCCAGTGCACAAAGTGAAGCGGAAAAGGAGAAGATAATTGCCAAAATGGAAGCAGATCAAGACTTGTCCAAAGTTCTTTACCAGCTGCAGGAAACTGAAAAGGAAGACATTATTCGAgaagaaAGATCTCGCAGGGAAAGACTGAGAAAGTCTCGAGTGGATGATATGGAGTCTATGGACATTGATCGCTCAGAGTCTGTGGCAGCACGACAGCTTCTCGATCTCGAGGATCTTGCCTTCACTCAAGGAAGCCACTTTATGGCCAACAAGCGCTGCCAGCTTCCTGACGGTTCCTTCCGTAAACAAAGAAAAGGCTACGAGGAGGTGCACGTACCTGCGCTTAAACCCAAGCCTTTTTCTGATGATGAGACTCTTGTGGCTGTTGAGAAGATGCCGAAATACGCCCAGGCTGCATTTGAAGGGTTCAAAACATTGAACCGCATTCAGAGCAAACTGTTCAAAACTACTATGGAGACAGATGGGAACCTGTTGGTTTGCGCTCCCACTGGAGCTGGTAAAACCAATGTTGCTCTGATGGCCATGCTCAGAGAGATTGGCAAGCATATCAACATGGATGGCACCATTAATGTGGATGATTTCAAAATCATCTACATTGCTCCTATGCGTTCACTGGTACAGGAAATGGTGGGCAGCTTTGGCAAGCGTTTGGCCAGTTATGGGATCACAGTGTCTGAGCTGACTGGTGATCACCAGCTCTGCAAGGAGGAGATCAATGCCACGCAGATCATTGTGTGTACACCTGAGAAATGGGACATCATCACCCGCAAGGGAGGGGAGCGTACATACACTCAGCTAGTGCGCctcatcattattGATGAGATTCACTTGCTACATGATGACCGTGGACCAGTATTGGAATCTCTCATTGCTCGCACCATCCGAAACGTGGAGCTCACCCAAGAGGAGGTGCGCCTTATTGGCCTCAGTGCCACGCTGCCGAACTATGAAGATGTGGCCACATGTCTCCGTGTGGACCCTGCTAAGGGCCTGTTCTACTTTGACAACAgTTTCCGCCCTGTGCCACTGGAGCAGACGTACGTGGGAATCACAGAGAAAAAGGCAATCAAACGCTTTCAAATCATGAATGAAATCGTCTATGAGAAGATCATGGAGCATGCGGGAAAGAACCAGGTTCTGGTATTTGTACACTCGCGTAAGGAGACTGGAAAGACTGCGAGGGCAATAAGGGATATGTGTCTGGAGAAAGATACTCTGGGGCTGTTCCTTCGTGAGGGTTCTGCTTCCACTGAGGTCCTGAGGACAGAGGCAGAGCAGTGCAAGAATCTGGAGCTAAAAGATCTCTTGCCGTATGGTTTTGCCATCCATCACGCTGGCATGACCAGAGTAGACCGAACTCTGGTGGAAGATCTGTTTGCTGATCGTCATATTCAggTACTGGTGTCTACCGCCACATTGGCCTGGGGAGTAAACTTGCCTGCCCACACTGTCATCATCAAAGGCACTCAGGTGTACAGTCCAGAGAAAGGAAGGTGGACTGAGCTGGGAGCTCTGGACATTCTGCAGATGCTTGGGCGCGCTGGCCGACCGCAGTATGATACAAAAGGAGAGGGCATTTTGATCACATCCCATGGAGAGCTGCAGTATTACTTGTCTCTGCTCAACCAGCAGCTGCCTATAGAAAGCCAGATGGTGGGGAAACTTCCCGACATGCTCAATGCTGAGGTGGTGCTGGGCAATGTTCAGAATGTGAAGGACGCTGTGAACTGGATTGGTTATACTTATCTGTATGTACGGATGCTACGTAACCCCACACTCTATGCGGTTTCCCATGATGAACGCAGCACTGATCCTTACCTGGAGCAGCGCAGGATGGACCTGGTGCACACAGCTGCCACTGTGCTGGAGAAGAACAATTTGGTCAAATATGACAAGAGGAGTGGCAGTTTCCAGGTGACCGACTTGGGACGGATTGCCAGTCACTTCTACATTACTCATGAGTCCATTATGACCTACAACCAGCTACTGAAACCTACACTTAGTGAAATCGAGCTCTTCAGGGTGTTCTCCCTCTCCTCTGAGTTCAGGAACATCACAGTCAGAGAGgaGGAAAAACTGGAGCTACAGAAGCTACTGGAGAGGGTGCCCATTCCCGTGAAGGAAAGTATAGAGGAGCCCAGTGCTAAGATAAATGTTCTGCTGCAGGCCTACATCTCCCAACTAAAACTAGAGGGCTTTGCTCTAATGGCTGACATGGTTTATGTCACACAGAGTGCTGGTCGATTGATGAGGGCCATTTTTGAGATTGTTCTTGGTCGAGGCTGGGCTCAGCTCACAGACAAAACAATGAACCTCTGCAAAATGATCGACAAAAGAATGTGGCAGTCCATGTCTCCTCTGCGTCAGTTCCGCAAGCTTCCAGAAGAAGTCATCAAGAAGATTGAAAAGAAGAGCTTTCCCTTTGAGCGTCTTTATGATCTCAATCACAATGAAATTGGTGAGCTGATCCGCATGCCAAAAATGGGGAAAACCATCCACAAGTATGTGCACCAGTTTCCAAAACTGGACCTTGCAGTTCACCTTCAGCCCATCACTCGCTCCACCCTGAAGGTGGAGCTCACCATCACTCCAGACTTTCAGTGGGATGATAAGGTGCATGGATCCTCTGAGGCGTTTTGGATCTTGGTGGAGGATGTTGACAGTGAGGTGATTCTGCACCATGAATACTTCCTGCTTAAGGCCAAATATGCTCAGGATGAACACTTGATCACCTTTTTTGTGCCCGTGTTCGAGCCGCTGCCTCCACAGTACTTCATCAGAGTCGTCTCAGACCGCTGGCTTTCTTGTGAAACTCAGCTGCCAGTGTCTTTCCGTCACCTCATCCTCCCAGAGAAATATCCTCCTCCCACTGAGctgctggatctgcagcctctgCCAGTATCTGCCCTGAGAAATGCTGCGTTTGAGAGCCTCTATCAGAACAAGTTCCCCTTTTTCAACCCCATTCAGACACAAGTGTTCAATGCAGTTTACAACAGTGATGACAATGTGTTTGTGGGAGCCCCTACTGGCAGTGGAAAGACAATCTGTGCAGAGTTTGCCATTCTGAGGATGCTGCTACATAACACAGAAGGACGCTGTGTCTACATCACGCCCATGGAGGCTCTGGCTGAACAGGTGTTTGTGGATTGGCACCAGAAGTTCCAAGAAGCACTGAACAAAAAAGTGGTCATACTGACTGGAGAAACCAGCACTGACCTAAAGCTGCTGGGAAAAGGAGACATCATCATCAGCACCCCGGACAAGTGGGACATCCTGTCCCGTCGATGGAAGCAGAGGAAGAATGTGCAGAATGTCAGCCTCTTCATTGTGGATGAGACTCACCTCATTGGAGGAGAGAATGGGCCTGTGCTGGAGGTCATCTGCTCCAGAATGAGGTACATCTCCTCTCAGATTGAGAGGCCCATCCGCATCGTGGCTCTCAGTTCCTCTCTGTCCAATGCTAAAGACGTAGCCCACTGGCTGGGCTGCAGTACCACGGCAACCTTCAATTTCCACCCTAATGTTCGGCCTGTGCCACTGGAACTCCACATCCAGGGTTTCAATGTGAGTCACACACAGACCCGTCTGCTGTCTATGGCTAAACCTGTCTATCATAGCATCATGAAGCACTCACCATCCAAACCAACCTTGGTGTTTGTGCCATCTCGTCGTCAAACCCGCCTCACTGCCATTGACATCCTCACGTTCTGTGCTGCAGACGTCGTTCCTCAGAGATTCCTGCATTGCACTGAGAAGGACCTGGCCCCGTTCCTGGAGAAGCTGTCTGATGCAACATTAAGGGAAACCCTTTCTAATGGTGTGGGCTATCTGCATGAGGGACTCTCCTCCACAGAATGCAAGATTGTTGAGCAACTCTTCAACTCTGGTGCCATTCAGGTCGTGGTGGCATCCCGTTCTCTTTGCTGGGGAACTAACATCTCTGCCCACTTGGTGATTGTCATGGACACGCAGTACTACAATGGCAAAATTCATGCTTATGTGGACTATCCAATCTACGACGTGCTCCAGATGGTGGGGAAAGCTAATCGCCCCCTACAGGATGATGAGGGCCGCTGTGTCATCATGTGCCAAGGATCTAAAAAGGACTTCTTCAAGAAATTCCTCTACGAGCCTCTGCCTGTTGAATCCCACCTGGACCACTGTCTCCATGATCACTTTAATGCTGAGATTGTCACGAAGACTGTGGAGAACAAGCAGGATGCTGTGGACTATCTGACGTGGACCTTCCTTTACCGCCGCATGACCCAGAATCCCAACTACTACAACCTGCAGGGTATGTCTCACCGGCACCTGTCGGACCACTTGTCGGAGCTGGTGGAGAACACGCTGCAGGATCTGGAGCAGTCCAAGTGCATCAGTGTGGAGGATGAGATGGATGTAGCTCCCCTCAACCTGGGCATGATCGCCGCTTACTACTACATTAACTATACCACCATCGAGTTGTTCAGCATGTCGCTGAATGCAAAGACAAAGATCCGTGGCCTGATCGAGATCATTTCCAATGCAGCAGAGTATAAGAACATTCCCATCAGACATCATGAAGATACGCTGCTCCGCCAGCTGGCTCAAAAAGTTCCCCACAAGCTGAACAGCCCCAAGTTTAATGACCCACACGTGAAGACCAACCTGCTGCTGCAAGCCCATCTCTCCCGTATGCAACTGAGTGCAGAGCTTCAATCTGACACGGAAGATATCCTCAGCAAGGCTGTGCGTCTCATTCAAGCATGTGTGGATGTGCTCTCCAGTAACGGCTGGCTGAGTCCTGCTCTGGCTGCTATGGAGCTGGCACAGATGGTGACTCAGGCCATGTGGTCTAAAGACTCGTATCTCAGACAGCTACCACACTTTACCACGGAGCACATCAAACGCTGCACTGATAAGggaGTGGAGAGTATTTTTGACATTATGGAAATGGAGGATGAGGAGCGCACTGCTCTCTTACAGCTGTCTGATGTTCAGATGGCTGATGTGGCACGGTTTTGTAACCGCTACCCTAATATTGAGCTATCCTACGAAGTTGCCGACAAAGACTACATCAAGAGTGGCAGTCCAGTTCTGGTTCAGGTGcagttagagagagaggaagaggtgaCTGGACCAGTCATTGCTCCACTCTTTCCCCAGaAACGTGAAGAGGGCTGGTGGGTTGTAATTGGAGACCCTAAGTCTAACAGTCTCATCTCCATTAAGAGGTTGACTCTGCAGCAGAAGGCCAAGGTGAAACTGGACTTCGTGGCCCCTGTTGTTGGAGTGCATAACTACACGCTGTATTTTATGAGTGATGCTTACATGGGCTGTGACCAAGAGTACAAGTTTAGCGTGGATGTGAAGGAGGCGGACAGTGATGGGGACAGCGACTCTGACTAatcttgtgttttgtgtgtattcttatgttttttttttttttgtaaaattcttGATTTTGTGAAAACTATGGTGAAACCTGCTTTTGCATAtgaaatattcataaaattgttctaaattcatttaaaagaaaCGCTGTACTTCTAATCTCGCAAATTGTGTTGCTTGGAAGTTGAGAAATTGTGTGtaaatttacacattttgatGTTTTGCTGGGTCAGGAATACATATTCTGAAATGTTGTTAGTATATGTCTGTTCCTGTTTTCACATTTGCTGTGGGTTAAAATGCGAACAAACAGGCCAAGCAAGATGGTAATCAAGCAGATATTTCAGTACAGCTCTGCTGTTCTGTTGCTACACTGCTGATAGTATGTGGATGTGAAGAGAATTTAAATACACAGATCCCAAGGATGGGTATTGTAAAGTTCTCttactttgatctttttttaCTGAGTTGAATTGTGTATGGGAATAAAGAGGTTGGTTGTCGAGAGTTTGTCTAGAATCTGTGCATTGCGTTTCGATCATATGATTAtagtttttaatgaataaagCTAGTCATTCAA

Function

symbol description
snrnp200 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosome conformational change to release U4 (or U4atac) and U1 (or U11). Predicted to be part of spliceosomal complex. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 33. Orthologous to human SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200).

NR:

description
PREDICTED: U5 small nuclear ribonucleoprotein 200 kDa helicase

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K12854 SNRNP200, BRR2; pre-mRNA-splicing helicase BRR2

RNA

RNA id representative length rna type GC content exon number start site end site
TU79140 False 617 TUCP 0.52 3 44620307 44622074
XM_022670744.1 True 7200 mRNA 0.48 45 44586306 44622070

Neighbor

gene id symbol gene type direction distance location
LOC103031680 syn1,LOC107667541,LOC107724908 coding downstream 161788 44374301 ~ 44424518 (-)
LOC103031368 NA coding downstream 245152 44328243 ~ 44341154 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding downstream 278471 44249997 ~ 44307835 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding downstream 547671 43919229 ~ 44038635 (-)
LOC103023596 NA coding downstream 947317 43563732 ~ 43638989 (-)
rasal1 rasal1 coding upstream 87604 44709678 ~ 44771528 (-)
lrrtm4 lrrtm4,LOC108413329,LOC107713029,LOC107671041,LOC107552197,LOC107714573 coding upstream 578271 45200345 ~ 45382669 (-)
mbd4 NA coding upstream 915736 45537810 ~ 45547163 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 992292 45614366 ~ 45722134 (-)
tmcc1 tmcc1 coding upstream 1119972 45742046 ~ 45802127 (-)
G58681 LOC108413520 non-coding downstream 93272 44491054 ~ 44493034 (-)
G58655 NA non-coding downstream 171502 44413427 ~ 44414804 (-)
G58643 NA non-coding downstream 185765 44324689 ~ 44400541 (-)
G58642 NA non-coding downstream 261894 44323526 ~ 44324412 (-)
G58583 NA non-coding downstream 451104 44134882 ~ 44135202 (-)
G58733 NA non-coding upstream 8504 44630578 ~ 44630874 (-)
G58758 dtx1,LOC102293283,LOC106585516 non-coding upstream 68542 44690616 ~ 44699500 (-)
G58759 NA non-coding upstream 78957 44701031 ~ 44701240 (-)
G58769 NA non-coding upstream 152263 44774337 ~ 44774596 (-)
G58770 NA non-coding upstream 152935 44775009 ~ 44775224 (-)
G58678 NA other downstream 108640 44474159 ~ 44477666 (-)
G58649 NA other downstream 217938 44367900 ~ 44368368 (-)
G58537 NA other downstream 903622 43682324 ~ 43682684 (-)
G58435 aaas other downstream 1478683 43102870 ~ 43107623 (-)
G58022 LOC103032860,LOC108432146 other downstream 3187828 41396086 ~ 41398478 (-)
G58868 NA other upstream 439035 45061109 ~ 45061674 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 1403217 46025291 ~ 46049573 (-)
G59341 NA other upstream 1560667 46182741 ~ 46186894 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other upstream 1981170 46603244 ~ 46681925 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other upstream 2574577 47196651 ~ 47414434 (-)

Expression


Co-expression Network