G58770


Basic Information

Item Value
gene id G58770
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44775009 ~ 44775224 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79220
aattctccacacaaccaaagaaaattactaaaacttgtaatactgaaaaaaacggaaaaacgcgtctgaggatgaaattaaacaaaccaagccacactcaaaagaaatatgtatatataaacaaaacaaaataatggacaaaaacaacaatctaatgaccgttaaaatggtattaatataacagcttcaccaaaagagaatagagcttagatcggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79220 True 216 lncRNA 0.31 1 44775009 44775224

Neighbor

gene id symbol gene type direction distance location
rasal1 rasal1 coding downstream 3481 44709678 ~ 44771528 (-)
LOC103031680 syn1,LOC107667541,LOC107724908 coding downstream 350491 44374301 ~ 44424518 (-)
LOC103031368 NA coding downstream 433855 44328243 ~ 44341154 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding downstream 467174 44249997 ~ 44307835 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding downstream 736374 43919229 ~ 44038635 (-)
lrrtm4 lrrtm4,LOC108413329,LOC107713029,LOC107671041,LOC107552197,LOC107714573 coding upstream 425121 45200345 ~ 45382669 (-)
mbd4 NA coding upstream 762586 45537810 ~ 45547163 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 839142 45614366 ~ 45722134 (-)
tmcc1 tmcc1 coding upstream 966822 45742046 ~ 45802127 (-)
mrps25 mrps25 coding upstream 1238453 46013677 ~ 46023377 (-)
G58769 NA non-coding downstream 413 44774337 ~ 44774596 (-)
G58759 NA non-coding downstream 73769 44701031 ~ 44701240 (-)
G58758 dtx1,LOC102293283,LOC106585516 non-coding downstream 75509 44690616 ~ 44699500 (-)
G58733 NA non-coding downstream 144135 44630578 ~ 44630874 (-)
G58681 LOC108413520 non-coding downstream 281975 44491054 ~ 44493034 (-)
G58795 NA non-coding upstream 27608 44802832 ~ 44805253 (-)
LOC111192737 NA non-coding upstream 47105 44822329 ~ 44823982 (-)
G58807 NA non-coding upstream 90295 44865519 ~ 44866035 (-)
G58810 NA non-coding upstream 93539 44868763 ~ 44869379 (-)
G58812 NA non-coding upstream 94371 44869595 ~ 44869915 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other downstream 152935 44586306 ~ 44622074 (-)
G58678 NA other downstream 297343 44474159 ~ 44477666 (-)
G58649 NA other downstream 406641 44367900 ~ 44368368 (-)
G58537 NA other downstream 1092325 43682324 ~ 43682684 (-)
G58435 aaas other downstream 1667386 43102870 ~ 43107623 (-)
G58868 NA other upstream 285885 45061109 ~ 45061674 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 1250067 46025291 ~ 46049573 (-)
G59341 NA other upstream 1407517 46182741 ~ 46186894 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other upstream 1828020 46603244 ~ 46681925 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other upstream 2421427 47196651 ~ 47414434 (-)

Expression


Co-expression Network