G58788


Basic Information

Item Value
gene id G58788
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 44802826 ~ 44810711 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79243
gggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgacacttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgccccctggggggcgctgttccaaaaaaacgagtatgtgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaatacagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcatttttaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccactgATCAATACCATAACATggagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaaccggatgattgccgcttgcggctatatttattattattattattattattattattattattgtgaacAGCTGGGCCGTAAGGTAGAAAAGGTTCAgaaccc
>TU79250
ttattattattattattattctttttctcctgtaaaaacagttgtgcagcctaaaccgtaagtcatagagaaatgaaacttggtaggtagatgtaggatcagtgcatctcggtggacaacaaaaatggcaccgattggtcaagtggtggcgctataaacaaggaaattcatttttcacaattttctcaataactcaaaaaccataagacctacattcaaaattctttttttgatggattccttgggtcaataccaacaactttccaatttggaccatgcacttccgtctatatagattttgtgctaatttgcataatatgcaaaacctacttttgcaaactagtcctaggaattttgaccaatcctggcatgtttggtatcaaaacactcatgagagcatgcgcttcaatattcattaagaaaaagttgaaatatgtaaacaatatggccgccatatgcaaattagtccttccggatatatgccccattcacttcaagaggtaaatttggagcact
>TU79254
gggcaacttaatcaatcaacatggctgaacaccatcagccaatcagcattcagcagacattttggcaggctgaatgttgcccaatctggatgacacttggcagttatgttcaggtggagacactgtagtgacctgcaaagtgctgaaacaatccgccccctggggggcgctgttccaaaaaaacgagtatgtgtcaatcatgctgtactattttgacatctaattgtttttgccatatttagtacagtggctctgacaaatttctcaatacaactatgtttaaaaagtgctttgttcattcataattgctaattgtttgaaaatagctatattgaaactactctctggatatttggcctatcacctccatttcagtcttgctgcacactgtagagtctctaggtaaatgttcattaaaaacatttgtgaaaatttcacatacaatactctccaggcatcaagcaatctgtgcgtccttggaatttctaacctaaattgctgtaactctgcagtatttgctgtaatctcacaatgttaaagacctctgtacaatatcactctgatgaagcgccatttaattcagaactagattaagaataacttgacattacatgtcatatcagaacattcactcctttgtgcctcttctcaacattaataacaggtgaaagacttttgatcattttctaaatgtgacagaatgtctccaattgtgttagaccttcttacacatcaccatcctatgctctagtaggcaccattgtgctagttggtgcttgatgaagcgccatttaattcagaactagatttataataacttcgtaattacatgtcatatcagaacattcactcctttgtgttaatttaaacttgtttggtcaaacatttcagcttgttctgcaaaggttcaaaggtcaatctgaataccactttgtgaacattctggttgaagccacctgatcaataccaataacatgtagacaccttttgactagttctaactcacttaatgaatatcctacaaagttcactagatttacatgtgaatttaagcactgatcaggttgaaaggcctctgctcaacattaataacaggtgaaaaacttgataatttctaaatgtgacagggcatctccaatcatattagaccttcttacacatcaccattcaatgctccagtaggcaccattgtgcaagttggtgcttgaaccggatgattgccgcttgcggctatatttattattattattattattattattattattattgtgaacAGCTGGGCCGTAAGGTAGAAAAGGTTCAgaaccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79243 False 1307 lncRNA 0.37 2 44803422 44810711
TU79250 False 516 lncRNA 0.36 2 44802826 44805244
TU79254 True 1311 lncRNA 0.37 3 44803422 44810711

Neighbor

gene id symbol gene type direction distance location
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 110476 44635726 ~ 44692350 (+)
LOC103027865 NA coding upstream 235315 44555413 ~ 44567511 (+)
LOC103027244 NA coding upstream 261844 44535869 ~ 44540982 (+)
LOC103030075 NA coding upstream 273374 44448432 ~ 44529452 (+)
LOC103022051 angptl2b,angptl2,LOC107669255,LOC107723239,LOC107727328,LOC107550587 coding upstream 1523229 43242755 ~ 43279597 (+)
LOC111192718 NA coding downstream 27718 44838429 ~ 44839196 (+)
LOC103029982 NA coding downstream 693380 45504091 ~ 45521326 (+)
creld1 creld1 coding downstream 711062 45521773 ~ 45534629 (+)
ift122 ift122 coding downstream 737431 45548142 ~ 45606522 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding downstream 797030 45607741 ~ 45613573 (+)
G58768 NA non-coding upstream 28229 44774262 ~ 44774597 (+)
G58658 NA non-coding upstream 369350 44429972 ~ 44433476 (+)
G58610 NA non-coding upstream 375851 44366384 ~ 44426975 (+)
G58609 NA non-coding upstream 377756 44340974 ~ 44425070 (+)
G58607 NA non-coding upstream 402286 44324693 ~ 44400540 (+)
G58820 NA non-coding downstream 87978 44898689 ~ 44899860 (+)
G58822 NA non-coding downstream 89541 44900252 ~ 44900642 (+)
G58823 NA non-coding downstream 90013 44900724 ~ 44901104 (+)
G58824 NA non-coding downstream 90487 44901198 ~ 44902709 (+)
G58830 NA non-coding downstream 106846 44917557 ~ 44918067 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 201866 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 218908 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 356323 44435858 ~ 44446503 (+)
G58529 NA other upstream 1141179 43660782 ~ 43661647 (+)
G58256 ppih other upstream 2176712 42577192 ~ 42626114 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other downstream 42069 44852780 ~ 44866838 (+)
G58971 NA other downstream 979000 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 2041653 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 2812843 47623554 ~ 47661357 (+)
G59782 NA other downstream 4059456 48870167 ~ 48879623 (+)

Expression


Co-expression Network