G58863


Basic Information

Item Value
gene id G58863
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45015742 ~ 45016106 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79345
ctccgaggacgaagaggagctctacgccgcaccagcccgtactccaaaaccgtttcccccaggggcggtgctctacccggctctcggccgcacagctCCAGAGGCCGTCCCGACTCACGTCCGTTCCCCTGCAGCCAAGGTGCGCTCCTCACCGGCggttccagagctagcttccccggtggctaaggcgttagcttccccggcgcctccaaagctagctcctccCGCGGCCAAGACACTCTCCTCTCCCGCGGCAAAGGCGCAAGCTGTGAAACCGCGCTCCGGGACTTCCGCGATGGCAGTCGAACCGCGCTCCGTGTTCCCCGCGGTTGCTGCCGAATCGCGCTACAGGACCTCCAACCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79345 True 365 lncRNA 0.67 1 45015742 45016106

Neighbor

gene id symbol gene type direction distance location
LOC111192718 NA coding upstream 176546 44838429 ~ 44839196 (+)
dtx1 dtx1,LOC107692206,LOC107671029 coding upstream 323392 44635726 ~ 44692350 (+)
LOC103027865 NA coding upstream 448231 44555413 ~ 44567511 (+)
LOC103027244 NA coding upstream 474760 44535869 ~ 44540982 (+)
LOC103030075 NA coding upstream 486290 44448432 ~ 44529452 (+)
LOC103029982 NA coding downstream 487985 45504091 ~ 45521326 (+)
creld1 creld1 coding downstream 505667 45521773 ~ 45534629 (+)
ift122 ift122 coding downstream 532036 45548142 ~ 45606522 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding downstream 591635 45607741 ~ 45613573 (+)
trh NA coding downstream 924762 45940868 ~ 45943458 (+)
G58860 NA non-coding upstream 18656 44996636 ~ 44997086 (+)
G58837 NA non-coding upstream 61102 44953950 ~ 44954640 (+)
G58830 NA non-coding upstream 97675 44917557 ~ 44918067 (+)
G58824 NA non-coding upstream 113033 44901198 ~ 44902709 (+)
G58823 NA non-coding upstream 114638 44900724 ~ 44901104 (+)
G58895 NA non-coding downstream 156072 45172178 ~ 45172462 (+)
G58903 NA non-coding downstream 176971 45193077 ~ 45235126 (+)
G58945 NA non-coding downstream 524476 45540582 ~ 45545478 (+)
G58962 tmcc1,LOC108436190 non-coding downstream 725940 45742046 ~ 45744398 (+)
G58965 tmcc1 non-coding downstream 734005 45750111 ~ 45754109 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 148904 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 414782 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 431824 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 569239 44435858 ~ 44446503 (+)
G58529 NA other upstream 1354095 43660782 ~ 43661647 (+)
G58971 NA other downstream 773605 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 1836258 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 2607448 47623554 ~ 47661357 (+)
G59782 NA other downstream 3854061 48870167 ~ 48879623 (+)
G59806 NA other downstream 3982054 48998160 ~ 48998471 (+)

Expression


Co-expression Network