G58868


Basic Information

Item Value
gene id G58868
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45061109 ~ 45061674 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79350
atcaagttcgccgatgatacaaccgtgctgggtctcatcaccaaaggcgacgagtcagcatacagagaggaggtgcagcggctgacagactggtgtacagtcaacaaccttcacctgaatgtggacaagacaaaggaaatggttgttgacttcaggagagcacaacacacccactctccactcaacatcgacgggtcctctgtggagattgttaagagcaccaagttccttggtgtccacttagcagataacctcacctggaccctgaacaccagctctacagccaagaaagcccagcagcgtctctacttcctccggaagctgagaaaggcccatctccctccacccatcctcacactcttctatagagggaccattgagagcatcctgagcagctgcatcactgcctggtttgggacctgcaccgtctctgaccgcaagaccctccagcgtattgtgaggacagctgagaggatcatcggcgtctctctcccctccatcacggacatttacaccacccacagcatccgcaaagcaaccagcattgtgaatgaccccacccatcc

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU79350 True 566 TUCP 0.54 1 45061109 45061674

Neighbor

gene id symbol gene type direction distance location
rasal1 rasal1 coding downstream 289581 44709678 ~ 44771528 (-)
LOC103031680 syn1,LOC107667541,LOC107724908 coding downstream 636591 44374301 ~ 44424518 (-)
LOC103031368 NA coding downstream 719955 44328243 ~ 44341154 (-)
gapvd1 gapvd1,LOC107550582,LOC107723237 coding downstream 753274 44249997 ~ 44307835 (-)
LOC103029164 pbx3b,pbx3,LOC108434408,LOC107550583,LOC107669256,LOC107555108 coding downstream 1022474 43919229 ~ 44038635 (-)
lrrtm4 lrrtm4,LOC108413329,LOC107713029,LOC107671041,LOC107552197,LOC107714573 coding upstream 138671 45200345 ~ 45382669 (-)
mbd4 NA coding upstream 476136 45537810 ~ 45547163 (-)
plxnd1 plxnd1,LOC107565410 coding upstream 552692 45614366 ~ 45722134 (-)
tmcc1 tmcc1 coding upstream 680372 45742046 ~ 45802127 (-)
mrps25 mrps25 coding upstream 952003 46013677 ~ 46023377 (-)
G58843 NA non-coding downstream 72607 44987966 ~ 44988502 (-)
G58821 NA non-coding downstream 161355 44898706 ~ 44899754 (-)
G58812 NA non-coding downstream 191194 44869595 ~ 44869915 (-)
G58810 NA non-coding downstream 191730 44868763 ~ 44869379 (-)
G58807 NA non-coding downstream 195074 44865519 ~ 44866035 (-)
G58878 NA non-coding upstream 9194 45070868 ~ 45137230 (-)
G58888 NA non-coding upstream 76137 45137811 ~ 45138505 (-)
G58891 NA non-coding upstream 85328 45147002 ~ 45147318 (-)
G58896 NA non-coding upstream 120024 45181698 ~ 45181960 (-)
G58898 NA non-coding upstream 120495 45182169 ~ 45182695 (-)
snrnp200 snrnp200,LOC107686403,LOC107602857,LOC107667532,LOC107600001,LOC108265067 other downstream 439035 44586306 ~ 44622074 (-)
G58678 NA other downstream 583443 44474159 ~ 44477666 (-)
G58649 NA other downstream 692741 44367900 ~ 44368368 (-)
G58537 NA other downstream 1378425 43682324 ~ 43682684 (-)
G58435 aaas other downstream 1953486 43102870 ~ 43107623 (-)
nr2c2 nr2c2,LOC107757055,LOC107549572 other upstream 963617 46025291 ~ 46049573 (-)
G59341 NA other upstream 1121067 46182741 ~ 46186894 (-)
LOC103023429 LOC103023429,LOC108442352,LOC108265644,LOC107594970,LOC107549568,LOC107684464 other upstream 1541570 46603244 ~ 46681925 (-)
LOC103040795 LOC108412055,LOC108265574,LOC105899021,LOC108412246 other upstream 2134977 47196651 ~ 47414434 (-)
LOC111192697 NA other upstream 2387284 47448958 ~ 47451392 (-)

Expression


Co-expression Network