G58962 (tmcc1,LOC108436190)


Basic Information

Item Value
gene id G58962
gene name tmcc1,LOC108436190
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45742046 ~ 45744398 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79475
CTCGGTCTATGCAGGAATGCTCTTTATTACACAAGTCTCTAACACATGGAGACATCAGAAGGCACTGTAGTTTTTTAAGCATGCATGCCCGTACACACatccgcacacacacatacactccttCATACATACACTCAAGGGTCAAGTTAAGGTCATAGTCTTCTTACAGTTGGGGAACCAAGAGCCTGTTCACCTGCCCCATCAGAGAAATACTGACAGGTTCTACTTTACATGACTGTGCAAAATCAAATCAACCTTCTTCAGACATTTAATTTGGACGCCACACATCTTAAATTAGGGTGAGGGAATACTACAGCGCACCACAGTCGCacgattatttatttatttcattgtaaGTTGAGGTTGGGAGATTTTATTATGGATAGTTTTAAAGAAgtgttcacactgtgtgtagctgCATTCCTAAGTCTAGGCTGGCGTCAATGTAGGACTGTCCTATAAAGACTCTTTCCTAGTACGTTTTTGgtcacacatatggaattagGCTAACAATGCCAATGACACTCTTTTCTtcaaaatgttctaataatatgcaaaaaactttttttgtataaaatcaaGCCTctattttctgtcattttcaCTCGGTTTTTATGTTGCTGTTTTCCCCTGGCTTTGTATTTGCACAGAGAACTGTGGGTAACCAAGTTTAATGAAAGATAGATAACATCAGTTGCGGAATGTCAGCTGCATTTCTTAGTCGAATACAAAGGGTGATTTACTTTGCGACAGCCTTCTGTGACGTAGTGGCCATGAAATGCAGCCTTATGCACCTCAGCTGCAGCCTAGGCTTTTGGAACGCTTTGGAATCTAGAGTGATAACAGCCAGCTGACCCTTTTACAtggtaaaaaaatgtatattcagtACCAGAGAGTTATCACTGAATTACAGATGTTACTGTTTAAGATGGGGAGCTCTACTGTTCCACCGATATCAACACAGTATCGGTACTGGCAATAGAGTGCCTCTATACTATGCAGCAGTTACTGATAGACATGTGTTCCCATGTTCTAAATGATGCTAGACTGGTGCCAGCAGCATGTCTGTGGTATGGAACTATCATGCTTCCCTAGAATTTTTCAAATGTGCAGCAGCTTAAACAGTAAATGCTGTTCTTCTCAGTAAATCTGGAAAACATTTGGGATATAGAACACTGCCACTACCAAAATTAAACCTATAGAAATGGAACACAATAAATATTAGGAATTATAGGCACAATTTGAGTAGTTAAGTAAGAATTTGTATCAGTACcggaaagaaaaaagggaatgACGATGAACAGGCTCCAATCACTAAAGTAGTCAAGCTTCATTCGACAGTGTAATCATTCATCTAATACAGTCTTAAATTTTCACTCAAAGTTCCTGAAAGTTGTATTTCATTGCCAATAGAAACAGTAAGGAAGCACAGGAGGTCCCTGAAGCACCACTCACTTCAAGTAGATCCATCAGTCCATTCTTTCAGGAAAGTGCGAGTCCTCCAACATAAAGTTCTTTAAATCCAGTGCCGTGAACGAGGTGAGGGCAGAGCAGACTAACACTGCTGTCAACCACAGACAAAAAGTGCATATCCCTCCCCTTTAAAGGCAGCCAATAAGATTCACTAAAAATCTACTAAAGGCAGTGACTGGGGAGGAAACTCCAGGTTCAACAACACAGACTCCAATCAAACAAATGGCGTCCCGTTACCCGTTCACAGAGTAACAGGAGCTTAATGCTACATAAGACTGAttaaaattatgataaaaaacAAGTAATTATTAGAAACTGGAATAATAACAATaccattaattaacattataataaaagcAGTGTGCCAAAGGCATTCTAGGAGAAAAAGTAGTCTATTTGTTGTTTCATACTTTCGAAAAATGTAAACGTGTACacctgtttctttaaaaaaaaagtaaaatcacagtttttattttttgcccaCACAGCGAGGCACTGGCATTGCCTCTAGGTGGTGAAGTGTGGTGGGGGTGTGGTCATCTCGGAGTGTGCAGGATGCGGTGGGTGTGTCCTGAGAGCACATCCCAGTTCCTCCAGAGAAAGGCAAAGagtaggaggaggagaagggtGGAGAAGGAGCGGCTGCGTGTCTTCATCAAAGGCACAACGCAGTTGGCCACCGTGGAGACGAACACCAGCAGGACGGCCATGAGCGTAAGCAGGACGTTTATAAGTTTTCCCAGAAGAGTGCGAGCTGTGGCATTCTCCAAACCCTCCAGCTGAactacctgctgctgctgctgctgcagttccATCTTAGAGATACGCGTCTGACATGCCTCCAGCGC

Function

symbol description
tmcc1 Enables identical protein binding activity. Involved in several processes, including endosome fission; endosome membrane tubulation; and membrane fission. Located in cytosol; endoplasmic reticulum-endosome membrane contact site; and rough endoplasmic reticulum.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79475 True 2321 lncRNA 0.42 2 45742046 45744398

Neighbor

gene id symbol gene type direction distance location
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 128473 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 135524 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 207417 45521773 ~ 45534629 (+)
LOC103029982 NA coding upstream 220720 45504091 ~ 45521326 (+)
LOC111192718 NA coding upstream 902850 44838429 ~ 44839196 (+)
trh NA coding downstream 196470 45940868 ~ 45943458 (+)
rbsn rbsn coding downstream 248660 45993058 ~ 46013668 (+)
LOC103044102 LOC108432094 coding downstream 313076 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 378463 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 661356 46405754 ~ 46423234 (+)
G58945 NA non-coding upstream 196568 45540582 ~ 45545478 (+)
G58903 NA non-coding upstream 506920 45193077 ~ 45235126 (+)
G58895 NA non-coding upstream 569584 45172178 ~ 45172462 (+)
G58863 NA non-coding upstream 725940 45015742 ~ 45016106 (+)
G58860 NA non-coding upstream 744960 44996636 ~ 44997086 (+)
G58965 tmcc1 non-coding downstream 5713 45750111 ~ 45754109 (+)
G58972 NA non-coding downstream 51338 45795736 ~ 45795993 (+)
G58974 NA non-coding downstream 54147 45798545 ~ 45799040 (+)
G59065 NA non-coding downstream 57973 45802371 ~ 45803103 (+)
G59067 NA non-coding downstream 60091 45804489 ~ 45822836 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 875208 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1141086 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1158128 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1295543 44435858 ~ 44446503 (+)
G58529 NA other upstream 2080399 43660782 ~ 43661647 (+)
G58971 NA other downstream 45313 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 1107966 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1879156 47623554 ~ 47661357 (+)
G59782 NA other downstream 3125769 48870167 ~ 48879623 (+)
G59806 NA other downstream 3253762 48998160 ~ 48998471 (+)

Expression


Co-expression Network