G58965 (tmcc1)


Basic Information

Item Value
gene id G58965
gene name tmcc1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45750111 ~ 45754109 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79481
ATGCGGCAGCTCTGCTGCTTGTCGTTGGTGTTGTTGGCGAGTTTGAGGTACTCGGCCACGTTCTCATCTCGTGCCGTCTGCTCGATGCGCAGCTGTTCCGTCAGCTTCAGGATCTTCTGCTGCAGCTGAGCGATGGCCTGTCGCGTGCGCTGGGGGTCAAGGGCCGCATCCTCAGACCCCGTGAGCGAGCCCTCCGTCCCGCATGAGGCGGCCAACGCAGCCTGAGCCAGACTTCCCTCCAACCTCTCGAtCTTTCCATGGTTCAGTCTGAGGAACTGCTCCCAGTGCATTCTTCTTCACGCTTTGCTTCACCGGACTCTTCATTTATACCCGCTCTGTTCCTCTCCGCGGCTCCGGGGCCGCCGGTCTCCGGTCTCTCTCTCCGCAGACGGACTTGTTTTGAAAGTTTCTCGAGCGGCACCTGAAACTGTGCTCCGCGCGCGCCG

Function

symbol description
tmcc1 Enables identical protein binding activity. Involved in several processes, including endosome fission; endosome membrane tubulation; and membrane fission. Located in cytosol; endoplasmic reticulum-endosome membrane contact site; and rough endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane and coiled-coil domains protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79481 True 446 lncRNA 0.61 2 45750111 45754109

Neighbor

gene id symbol gene type direction distance location
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 136538 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 143589 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 215482 45521773 ~ 45534629 (+)
LOC103029982 NA coding upstream 228785 45504091 ~ 45521326 (+)
LOC111192718 NA coding upstream 910915 44838429 ~ 44839196 (+)
trh NA coding downstream 186759 45940868 ~ 45943458 (+)
rbsn rbsn coding downstream 238949 45993058 ~ 46013668 (+)
LOC103044102 LOC108432094 coding downstream 303365 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 368752 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 651645 46405754 ~ 46423234 (+)
G58962 tmcc1,LOC108436190 non-coding upstream 5713 45742046 ~ 45744398 (+)
G58945 NA non-coding upstream 204633 45540582 ~ 45545478 (+)
G58903 NA non-coding upstream 514985 45193077 ~ 45235126 (+)
G58895 NA non-coding upstream 577649 45172178 ~ 45172462 (+)
G58863 NA non-coding upstream 734005 45015742 ~ 45016106 (+)
G58972 NA non-coding downstream 41627 45795736 ~ 45795993 (+)
G58974 NA non-coding downstream 44436 45798545 ~ 45799040 (+)
G59065 NA non-coding downstream 48262 45802371 ~ 45803103 (+)
G59067 NA non-coding downstream 50380 45804489 ~ 45822836 (+)
G59079 NA non-coding downstream 79729 45833838 ~ 45834105 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 883273 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1149151 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1166193 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1303608 44435858 ~ 44446503 (+)
G58529 NA other upstream 2088464 43660782 ~ 43661647 (+)
G58971 NA other downstream 35602 45789711 ~ 45790154 (+)
G59257 cdk11a,LOC108265382 other downstream 1098255 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1869445 47623554 ~ 47661357 (+)
G59782 NA other downstream 3116058 48870167 ~ 48879623 (+)
G59806 NA other downstream 3244051 48998160 ~ 48998471 (+)

Expression


Co-expression Network