G58972


Basic Information

Item Value
gene id G58972
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45795736 ~ 45795993 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79488
ttaacaatctccacagaggacccgtcgatgttgagtggagagtgggtgtgttgtgctctcctgaagtcaacaaccatttcctttgtcttgtccacattcaggtgaaggttgttgactgtacaccagtctgtcagccgctgcacctcctctctgtatgctgacttgtcgcctttggtgatgagacccagcacggttgtatcatcggcgaacttgataaagctgttagaactgtgttttgcagcacagtcatgagtcagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79488 True 258 lncRNA 0.49 1 45795736 45795993

Neighbor

gene id symbol gene type direction distance location
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 182163 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 189214 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 261107 45521773 ~ 45534629 (+)
LOC103029982 NA coding upstream 274410 45504091 ~ 45521326 (+)
LOC111192718 NA coding upstream 956540 44838429 ~ 44839196 (+)
trh NA coding downstream 144875 45940868 ~ 45943458 (+)
rbsn rbsn coding downstream 197065 45993058 ~ 46013668 (+)
LOC103044102 LOC108432094 coding downstream 261481 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 326868 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 609761 46405754 ~ 46423234 (+)
G58965 tmcc1 non-coding upstream 41627 45750111 ~ 45754109 (+)
G58962 tmcc1,LOC108436190 non-coding upstream 51338 45742046 ~ 45744398 (+)
G58945 NA non-coding upstream 250258 45540582 ~ 45545478 (+)
G58903 NA non-coding upstream 560610 45193077 ~ 45235126 (+)
G58895 NA non-coding upstream 623274 45172178 ~ 45172462 (+)
G58974 NA non-coding downstream 2552 45798545 ~ 45799040 (+)
G59065 NA non-coding downstream 6378 45802371 ~ 45803103 (+)
G59067 NA non-coding downstream 8496 45804489 ~ 45822836 (+)
G59079 NA non-coding downstream 37845 45833838 ~ 45834105 (+)
G59080 NA non-coding downstream 43215 45839208 ~ 45839569 (+)
G58971 NA other upstream 5582 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 928898 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1194776 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1211818 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1349233 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 1056371 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1827561 47623554 ~ 47661357 (+)
G59782 NA other downstream 3074174 48870167 ~ 48879623 (+)
G59806 NA other downstream 3202167 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3526285 49322278 ~ 49370251 (+)

Expression


Co-expression Network