G59088


Basic Information

Item Value
gene id G59088
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 45891510 ~ 45891748 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79651
cactgagaaactgcagaactatgtatgggattacaatatgcgtgcgaggcagatgaaagagaaacaggagatacagtgtgtgagaacatttacctgtgagtagctcataccagaacaggcaaatctctctctctctttctctctcacgtttcttagattgatctctctgatgagatgtgtgaaaactaataaaaactagcaagcccaccctaaaaacttactgaacagaaaaaaaagaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79651 True 239 lncRNA 0.39 1 45891510 45891748

Neighbor

gene id symbol gene type direction distance location
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 277937 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 284988 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 356881 45521773 ~ 45534629 (+)
LOC103029982 NA coding upstream 370184 45504091 ~ 45521326 (+)
LOC111192718 NA coding upstream 1052314 44838429 ~ 44839196 (+)
trh NA coding downstream 49120 45940868 ~ 45943458 (+)
rbsn rbsn coding downstream 101310 45993058 ~ 46013668 (+)
LOC103044102 LOC108432094 coding downstream 165726 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 231113 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 514006 46405754 ~ 46423234 (+)
G59084 NA non-coding upstream 8511 45882784 ~ 45882999 (+)
G59080 NA non-coding upstream 51941 45839208 ~ 45839569 (+)
G59079 NA non-coding upstream 57405 45833838 ~ 45834105 (+)
G59067 NA non-coding upstream 68674 45804489 ~ 45822836 (+)
G59065 NA non-coding upstream 88407 45802371 ~ 45803103 (+)
G59089 NA non-coding downstream 1546 45893294 ~ 45897902 (+)
G59091 NA non-coding downstream 8924 45900672 ~ 45901408 (+)
G59093 NA non-coding downstream 14363 45906111 ~ 45906318 (+)
G59094 NA non-coding downstream 15854 45907602 ~ 45908097 (+)
G59101 NA non-coding downstream 131360 46023108 ~ 46034230 (+)
G58971 NA other upstream 101356 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1024672 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1290550 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1307592 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1445007 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 960616 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1731806 47623554 ~ 47661357 (+)
G59782 NA other downstream 2978419 48870167 ~ 48879623 (+)
G59806 NA other downstream 3106412 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3430530 49322278 ~ 49370251 (+)

Expression


Co-expression Network