G59101


Basic Information

Item Value
gene id G59101
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46023108 ~ 46034230 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79671
gACAGACTGACCTTGCTCCCTCACTCAGGTCTCCATGTGTGTTATAGTTCACCGTCATGATCTTCACCGAGTTCTTAAACACCACCTCTCCTCTCTGCAGATAATCCAGAGTTCTCCGGATAGGAAACCTTCCCTTCATCGGCATGATCTCCTCTTTACTCCCCGCGCTGCTCTAAAATCATTAATTCAGTAATatcagtactgtgtgtgtgtgtgtgtgtgtgtgtttgtaaacaaCGCGTGGTGTGGAGACATACAGACCGCTTATAAGCACTGCTCACCAGACGTGGAGTTCATACTGCTGAAATGCCGTCCCTATTATCTACCACGGGAAtttactgctgtgtttttagccgctgtttacatccctccgc
>TU79672
gACAGACTGACCTTGCTCCCTCACTCAGGTCTCCATGTGTGTTATAGTTCACCGTCATGATCTTCACCGAGTTCTTAAACACCACCTCTCCTCTCTGCAGATAATCCAGAGTTCTCCGGATAGGAAACCTTCCCTTCATCGGCATGATCTCCTCTTTACTCCCCGCGCTGCTCTAAAATCATTAATTCAGTAATatcagtactgtgtgtgtgtgtgtgtgtttgtaaacaaCGCGTGGTGTGGAGACATACAGACCGCTTATAAGCACTGCTCACCAGACGTGGAGTTCATACTGCTGAAATGCCGTCCCTATTATCTACCACGGGAAtttactgctgtgtttttagccgctgtttacatccctccgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79671 True 374 lncRNA 0.47 2 46023108 46034230
TU79672 False 368 lncRNA 0.47 2 46023108 46034230

Neighbor

gene id symbol gene type direction distance location
rbsn rbsn coding upstream 9440 45993058 ~ 46013668 (+)
trh NA coding upstream 79650 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 409535 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 416586 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 488479 45521773 ~ 45534629 (+)
LOC103044102 LOC108432094 coding downstream 23244 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 88631 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 371524 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 662249 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 793738 46827968 ~ 46851232 (+)
G59094 NA non-coding upstream 115011 45907602 ~ 45908097 (+)
G59093 NA non-coding upstream 116790 45906111 ~ 45906318 (+)
G59091 NA non-coding upstream 121700 45900672 ~ 45901408 (+)
G59089 NA non-coding upstream 125206 45893294 ~ 45897902 (+)
G59088 NA non-coding upstream 131360 45891510 ~ 45891748 (+)
G59127 NA non-coding downstream 10914 46045144 ~ 46046262 (+)
G59135 wdr46 non-coding downstream 39275 46073505 ~ 46103556 (+)
G59133 NA non-coding downstream 56146 46090376 ~ 46136855 (+)
G59131 NA non-coding downstream 58338 46092568 ~ 46093819 (+)
G59136 NA non-coding downstream 59869 46094099 ~ 46094982 (+)
G58971 NA other upstream 232954 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1156270 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1422148 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1439190 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1576605 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 818134 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1589324 47623554 ~ 47661357 (+)
G59782 NA other downstream 2835937 48870167 ~ 48879623 (+)
G59806 NA other downstream 2963930 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3288048 49322278 ~ 49370251 (+)

Expression


Co-expression Network