G59127


Basic Information

Item Value
gene id G59127
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46045144 ~ 46046262 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79703
CTCTGCAACCTGCTCAGTGGTCACTATCTGCTGAGCCAGCACCTCCAGACTGGTTGTCATGGCGATATAAGGTCATTATTGGTGTCTGACTGGACCAATGCCAGTGCCTCATTTGTTAACAGTCCCACCTGTACACATTTTGGAACAATATATTATTGTTTAACTAAATTTTTATTGTCTgccatttattaaaaatgcataGAAACTATCGCAGTGTCCTACAGGATTAagttcccagacagggattacaCCTAGACAATAATATTTTTGCTTATGATGATTTTTATACTATGATAGTTTccttaatattataaaaaaaacaatcacccTACTGACAGTTTCACAATATGATGAATCATAACATCTGTATCAGGATACTGTATCAGGATACAGTTTATGCCAATGCACTGAAATAAACGTCCTAATAATAGGTTTATCCCTATTTGCTCTAATAGGGATAATGGAAAGAGCACCTGCTTCTTAATAGGAAATACTTTACACTACTTGTTTGAACACTATTGTAAAGATTTTATTGCATGCAGCATAATTGTGTGGCATTCTTGTGGTAAGATACTGATTATGGATGATTAGTTCTGGATCACGTGCCAAAATTAACGGATAGAGCTCCATCTATGCAGAGAACACTGCactgttcaaaaaatgtaaagctGATGCTTGGCACTGGGCCAAGAATACTGCACTTGAAGACCATGGTCGAACATGTAGTTGCACCAATGTGTCCCATACTAATTAGCAGTTTGCTTTGATATGGAGATtacaaaatgtgtgtgtgtgtgtgaatcttAATCTAAGTCTACTTAAAAGCAGTGTTTCCAAAAGATATTATACAGTAATGGCACTGTGCAGTATTCCCATACTGCAGTATTGGCACTGTGTAGTATTGGCACTATGCAGTATTGGCACAGTGCAGTAGTATTGGCACAGTGCAGTAGTATTGGCACAGTGCAGTTGTATTCGAACAGTGCAGTATTAGCCTTTGCAGTAATATTTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79703 True 1014 lncRNA 0.38 2 46045144 46046262

Neighbor

gene id symbol gene type direction distance location
rbsn rbsn coding upstream 31476 45993058 ~ 46013668 (+)
trh NA coding upstream 101686 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 431571 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 438622 45548142 ~ 45606522 (+)
creld1 creld1 coding upstream 510515 45521773 ~ 45534629 (+)
LOC103044102 LOC108432094 coding downstream 11212 46057474 ~ 46070282 (+)
LOC111192690 LOC108432118 coding downstream 76599 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 359492 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 650217 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 781706 46827968 ~ 46851232 (+)
G59101 NA non-coding upstream 10914 46023108 ~ 46034230 (+)
G59094 NA non-coding upstream 137047 45907602 ~ 45908097 (+)
G59093 NA non-coding upstream 138826 45906111 ~ 45906318 (+)
G59091 NA non-coding upstream 143736 45900672 ~ 45901408 (+)
G59089 NA non-coding upstream 147242 45893294 ~ 45897902 (+)
G59135 wdr46 non-coding downstream 27243 46073505 ~ 46103556 (+)
G59133 NA non-coding downstream 44114 46090376 ~ 46136855 (+)
G59131 NA non-coding downstream 46306 46092568 ~ 46093819 (+)
G59136 NA non-coding downstream 47837 46094099 ~ 46094982 (+)
G59140 wdr46,LOC107690721 non-coding downstream 60705 46106967 ~ 46108427 (+)
G58971 NA other upstream 254990 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1178306 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1444184 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1461226 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1598641 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 806102 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1577292 47623554 ~ 47661357 (+)
G59782 NA other downstream 2823905 48870167 ~ 48879623 (+)
G59806 NA other downstream 2951898 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3276016 49322278 ~ 49370251 (+)

Expression


Co-expression Network