G59136


Basic Information

Item Value
gene id G59136
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46094099 ~ 46094982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79714
TTTATATATCCTATGTATGTAATCCATTTTGTTGATCCATATCATGTGTGAGTCTTCATACCTTTTGTAGTTACACCATCATTTATTCATCTGTTTTGGTGTTATAGATGCTATGTATAATCATGTATTTCCTACTACTCTGTCATATTTGCTCGCATTTATGCATGCAAATCGTGTCGGATCAGCATGGCTTGATATGGGCTTGGGACTTATAAATAGCACGGAACCTGcaccttaaaaatgttaaaacttagTTCAAACTTGATCTTTATTTACTAGATAACAGCCAATCACTTAACCAATCCCACCACAATTGATGCGTGGGATAAATCCCACGCAAGGGGGGAATGTGGGCCCTAAATTGGTGATCAATATATGCTATATTACCTTTATAATAGTATATTTGGATAAAAAGTCTAGAGTTCACTAAGTTCTGTTAAAACAGGTGTCTGACCCTTTCTCTGAGGCCTGTACAGTCTGTACCAAGGCGTGAGGTGCTGGTCGAGGCGACCTTGGGTTTTGGCTGACTTCAGCAGAAAAAGCCCAGACGTTGCCAAAAGCCCCCACCTTTGTTCacccaaatactgtataaaagtgtgtgtattcCTCTGTATTATCAGAAGACTGAAGCTTCCTGACCCTATCTGGCTGACTTCAAGAACAATAAAAGATCAACTTAGAACTTCGGAAAGACtcgtcttctcctttctttaaacttgaggcactcgtctgtttttatcttctttcttttaaacttaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79714 True 761 lncRNA 0.39 2 46094099 46094982

Neighbor

gene id symbol gene type direction distance location
LOC103044102 LOC108432094 coding upstream 23817 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 80431 45993058 ~ 46013668 (+)
trh NA coding upstream 150641 45940868 ~ 45943458 (+)
rho rho,exorh,LOC107698434,LOC107747750,LOC107758318 coding upstream 480526 45607741 ~ 45613573 (+)
ift122 ift122 coding upstream 487577 45548142 ~ 45606522 (+)
LOC111192690 LOC108432118 coding downstream 27879 46122861 ~ 46186900 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding downstream 310772 46405754 ~ 46423234 (+)
LOC111192740 NA coding downstream 601497 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 732986 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 813300 46908282 ~ 46923292 (+)
G59131 NA non-coding upstream 280 46092568 ~ 46093819 (+)
G59127 NA non-coding upstream 47837 46045144 ~ 46046262 (+)
G59101 NA non-coding upstream 59869 46023108 ~ 46034230 (+)
G59094 NA non-coding upstream 186002 45907602 ~ 45908097 (+)
G59093 NA non-coding upstream 187781 45906111 ~ 45906318 (+)
G59140 wdr46,LOC107690721 non-coding downstream 11985 46106967 ~ 46108427 (+)
G59141 NA non-coding downstream 21745 46116727 ~ 46121462 (+)
LOC111192691 NA non-coding downstream 114759 46209741 ~ 46216357 (+)
G59163 NA non-coding downstream 156717 46251699 ~ 46256811 (+)
G59173 LOC108432102 non-coding downstream 190094 46285076 ~ 46297423 (+)
G58971 NA other upstream 303945 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1227261 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1493139 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1510181 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 1647596 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 757382 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1528572 47623554 ~ 47661357 (+)
G59782 NA other downstream 2775185 48870167 ~ 48879623 (+)
G59806 NA other downstream 2903178 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 3227296 49322278 ~ 49370251 (+)

Expression


Co-expression Network