G59215


Basic Information

Item Value
gene id G59215
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46471775 ~ 46475979 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79825
atttatgatATGGTAGACACTTTCCTTTTTGTGAACATTTatggtttaaaacaaaaaaacaaaagagagtaGAATTAATACTGGTTCTGTCACCACTGTGGtttaaaataatcaacattgacTGAGAAGATATGTTCAcctaatgtttcttttttaaaggcGTGTCATAAATATGGGATATTCTGAGCACAGAGAGATCAGTCTTAAACAGTCCTAAAGAGGCGAGAGGCACAGCTTACAGTACTTATAGTACGGTACTGTTTCTACAGGTAACAGTACTAGTAGATACACAGCAGATAATAGTGATGCTTTTAGAGCTGCTGGGTTGCACTGccacatttgtttgttttcttctgACTAAAAAGGAGTTTCCTCTTTTTGTAAGTGAGCTTCAAAAGGATGCTACAAAACCGCAGAAGCAGAACGAGTTGAGCAGGTGGAGAAGGAACAAAAACTTgccataaaacaaagaaaaaaacaaatcagcATCTGAAACATGAGCATCTTATACAGTATTTCCAACACACGTGATGGGTGAATTAATGCTTCACAAATAATAACACCATTTACAGGAAATCTATAAAAAAGAGggtgaaaaaaatcataaaacatcCATCTTATCATCttataatatttcataaaaatccaCAACTTCATCTATTATGGTACAAAAGGACACAGAACGTCAACGGAAAAGGAGAGAACAGTGCATCAGGGGAAAGAAAGCTCACCAGGAACAACAGTGGCATAGGTGTGGaacgatgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79825 True 805 lncRNA 0.37 2 46471775 46475979

Neighbor

gene id symbol gene type direction distance location
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 48541 46405754 ~ 46423234 (+)
LOC111192690 LOC108432118 coding upstream 284875 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 401493 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 458107 45993058 ~ 46013668 (+)
trh NA coding upstream 528317 45940868 ~ 45943458 (+)
LOC111192740 NA coding downstream 220500 46696479 ~ 46697515 (+)
mmp23b mmp23b,LOC106572002 coding downstream 351989 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 432303 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 481127 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 512997 46988976 ~ 47024024 (+)
G59197 NA non-coding upstream 33741 46372638 ~ 46438034 (+)
G59203 NA non-coding upstream 34415 46435706 ~ 46437360 (+)
G59195 NA non-coding upstream 94462 46376783 ~ 46377313 (+)
LOC111192692 NA non-coding upstream 141269 46325449 ~ 46330506 (+)
G59185 LOC108265865 non-coding upstream 142095 46318123 ~ 46329680 (+)
G59220 fgd3,LOC106529940 non-coding downstream 7458 46483437 ~ 46485586 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding downstream 124469 46600448 ~ 46607372 (+)
G59241 NA non-coding downstream 208670 46684649 ~ 46685038 (+)
G59243 NA non-coding downstream 211282 46687261 ~ 46688027 (+)
LOC111192739 NA non-coding downstream 214278 46690257 ~ 46690960 (+)
G58971 NA other upstream 681621 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1604937 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 1870815 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 1887857 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 2025272 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 376385 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 1147575 47623554 ~ 47661357 (+)
G59782 NA other downstream 2394188 48870167 ~ 48879623 (+)
G59806 NA other downstream 2522181 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2846299 49322278 ~ 49370251 (+)

Expression


Co-expression Network