G59259 (ubiad1,LOC107718257,LOC107572294,LOC107575167)


Basic Information

Item Value
gene id G59259
gene name ubiad1,LOC107718257,LOC107572294,LOC107575167
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46819166 ~ 46824686 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79895
ttttataagatCTGATCATTCTCAAAAGTTTATCAAACACAGCTCTTTAAAGGAGACATTACTAAACAGCATTCTACTCTGCAACATCTCTCCTCTAAAAAATAAACCTCAGATTTGGCTTTAGGCCGTCAAAGCCGAGCATACTAACTGTTTCAACATGTGTGAAGGGCTCTGTAAAGCCAACATATAGATGTACTCGAATATGAAGTGATATAATTCCTTCACGCTGGCTCAAAAAACCACACAGTACTGCTGGCCCATGTTACTCAACATTTGGTCCTACACAGCGCACGACTCTGGGTGTAACTGAGTGGACTTGGACACAGCTTGACAACTCTGGCAATGTAAGCGTTGAAGCTTGGCTATGGAATATGCTATATGACATACAGATGGAGACTTGTGCTTGACCGACAAAAGAATACTCAAGAGGTTTAGAAAATTAATAAGTAAATGTACAATCTTAAGTAACAAAACTGTCACACATCCAGGGGACAAACGGAAATTTGATGTTTatcaataatttaaatttagcttaGCAAGCGTGTAAATATCAACACTTTGTACACACTGAAACACCGGTTCGTTATGCAGAATACTGATGCCGCCAGGTCGCTTCTGTTTCATCGCAACATCTCGCAAATGTTTTGTTAGCGCTAAAGCatgaattatacaataaattaaagtctctgtatttccaaaaaaaaaaaaattctataaatACAAACGAGAAGTACGTAATCCTAgtacaacatttttaaaacagaaagaaacaaaagttcagaaataaaaataatataaagggTCTTTCACAAGAGCGGCAAGCTACCCTGAGGTGCTAAAATAATCCCAAAGACGTAGAAAAGTCCCATCAGCAGATTGAGTTTGGCAGTCTTCTGAGGGATCTTGGAGTAGCACTGGCTGCGGAACTGCCTCTCCAGTGGGAAGGCCATCGGTAGTGTGAGCAGCGGCAGTGCCATGCTTATGGTGTAACGTGTGGCCAGTATGCAGAACAGCACGTACGGGACGAAGAGCAGCAGGTTGTAAATGATGTACGACAGCGTAGGACCCACTAGGATGGCGAGGGTGACTATGCCCGCCTGTTTGTCCGAGTCCATGTCGCGTGTGTTGTTGCTGTGCAGGATGGCCTCAGTGTTGAGTGCCAGTGGCACGGCGTACACCAGCGGCAGCACGGACAGGTAACCCACCTGAACGGCGTGAGCAAACATTACTGCCAATGGGCCAAAGGTGATGAGGATGACCACGTCACCAAGAGCAACGTACTTCAGACCTATTCCTCCAGTGTACAAAAAGGAGCTTGAGAGTCCACCAAAATAGATGAGAGCCAGATGCTCGAGTCTTAGCGTGGAGAGAAAATACAACAAGGTGGCACAAAGGCACCCAACTGAGTACAACAACGCGCCGAACATCACCACGTCCTGGGGCTCCAATATCTGATCCACCAGAGTCCTGTCATCACTCTTCTTGTGGTCGATCCCCTTGGAGAAATCGTAATACGTGTTCACTAAGTTCCCTGCACCGTGGACCACCAGTACTGCCACGGCACAGACCAGCAGAATGATGAGGTCCACTGAGCCCTCGAGCTTGTAGGCCAGAGCGCTCCCCAAAGCCACAGGTGTGAGGGAAGCACTGAAGCTCCACGGCCGCAGGGCCAAGACGTACGCCGCACATTTATCCTGCAAGTGCAAAGCCATCTTAGTCACTCTGGAAACCTTGCTGTTGTGATTCCTCTCTACGGACGTCCCCATTGGCGCTTTTGCCCCATTCATTCCGTTAGACCCTGCCAGCACGCATGTCTCAGCACTCATCTTCTTCTGGCCCGCTGCCATCACTACCGTAGTGTGGGGTTGTGTAGAAGTACCAAGAATGGTGTACCTGCTCCTCTCCCACTGCTGCAGACCGCGGAGCTACTTCACACCCCGCCGACACATCCTCTCCTCACCGCCGTCCTTCCCAGCCTAACCCGAGGCAGCGGAGCGAGTCCCGGACCGCGGCGCCGATGGAGCACCGAGCGACGTGTCAGTTATGAGGGCATTTAGCTTAGCCGCTATGCTAACATACTAGCTAACGTAGCTGCAGGCGGACGCCATTCCAATCAGCGATGCTATATAGCGAGCCTGCCCACTCCATTGCTCCCACCCGTTAACTACATATATCTCACTACATCAGACTGAAG

Function

symbol description
ubiad1 Enables antioxidant activity; nitric-oxide synthase activity; and prenyltransferase activity. Involved in endothelial cell development; menaquinone biosynthetic process; and vitamin K biosynthetic process. Acts upstream of or within cellular response to fluid shear stress; circulatory system development; and ubiquinone biosynthetic process via 3,4-dihydroxy-5-polyprenylbenzoate. Located in Golgi apparatus. Is integral component of Golgi membrane. Is expressed in head; heart; and heart tube. Human ortholog(s) of this gene implicated in Schnyder corneal dystrophy. Orthologous to human UBIAD1 (UbiA prenyltransferase domain containing 1).

NR:

description
PREDICTED: ubiA prenyltransferase domain-containing protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79895 True 2194 lncRNA 0.48 3 46819166 46824686

Neighbor

gene id symbol gene type direction distance location
LOC111192740 NA coding upstream 121651 46696479 ~ 46697515 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 395932 46405754 ~ 46423234 (+)
LOC111192690 LOC108432118 coding upstream 632266 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 748884 46057474 ~ 46070282 (+)
rbsn rbsn coding upstream 805498 45993058 ~ 46013668 (+)
mmp23b mmp23b,LOC106572002 coding downstream 3282 46827968 ~ 46851232 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 83596 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 132420 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 164290 46988976 ~ 47024024 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding downstream 371975 47196661 ~ 47198250 (+)
LOC111192739 NA non-coding upstream 128206 46690257 ~ 46690960 (+)
G59243 NA non-coding upstream 131139 46687261 ~ 46688027 (+)
G59241 NA non-coding upstream 134128 46684649 ~ 46685038 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding upstream 211794 46600448 ~ 46607372 (+)
G59220 fgd3,LOC106529940 non-coding upstream 333580 46483437 ~ 46485586 (+)
G59276 LOC108265386,LOC108442346 non-coding downstream 58664 46883350 ~ 46887023 (+)
G59285 NA non-coding downstream 101993 46926679 ~ 46931683 (+)
G59465 NA non-coding downstream 171839 46996525 ~ 46998150 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 384915 47209601 ~ 47213248 (+)
G59539 NA non-coding downstream 508809 47333495 ~ 47340169 (+)
G58971 NA other upstream 1029012 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 1952328 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2218206 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2235248 44579080 ~ 44583918 (+)
LOC111192736 NA other upstream 2372663 44435858 ~ 44446503 (+)
G59257 cdk11a,LOC108265382 other downstream 27678 46852364 ~ 46881891 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 798868 47623554 ~ 47661357 (+)
G59782 NA other downstream 2045481 48870167 ~ 48879623 (+)
G59806 NA other downstream 2173474 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2497592 49322278 ~ 49370251 (+)

Expression


Co-expression Network