G59276 (LOC108265386,LOC108442346)


Basic Information

Item Value
gene id G59276
gene name LOC108265386,LOC108442346
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46883350 ~ 46887023 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU79912
ACCGCAGCAATGCACAAATAATACCTCCGACTTTACACACAGGATCAGACcaatttatacagaaaaaacatcCTTTTAGACAGTAATTTGGTTAAACAGTTATAcgaaaatacattttcttacattacatttcttacatttcaaCCTATTGTTTCCCATTCATAATATAAAATCAGCTTTTCGGAAACGCTTAACCATTCTTTTTGTAATCAGGACACACATATTGCTATCTTCACACTTGTGCTAAGTGGAGAATATTACACCACAAGTGGAGATCATTAAGTTACACTGTCAGAACTATAAACTAACAAACATGTTCTTAGAAATACATCCACAGATGTCAAAAGTCCACAGGCTCAGAATCGAGAGGTTCGACTAGGACTCACCTTTCCCACAGCAAGTGGGAGATGTGAATCTGAGGCTCGTGGTAAGGCATAAAAAGAACAGAAGACATTGGTTATTTCACAGACAGCCACAGGGAATGTCTTCAGCTAAGTAGTCTAAGAAACACAGGTTTGCTGTGAATTCAAGTCTCAGCACGCAATACAAGAAATACAAGGCATTACAACCACAAGTGGAAGAAGGAAAGATGTGGGAAGCACTGAGTAAGatgtacagtttttaaaaatggcaGAAGTTGAACTCTTAAATTAAGATGCTGCACCTGAAAGAGTCAGAACAGGCATGTCAACTATGCAGAAAACTGCACAGGAGTTCATTGTcaccatttaaaaacaacaagctGTTGATAGGTCTTTTACAGTATAAAGAATCATAAGGTTATAGTAGCAGTACAACAAAACACGTTGACGCTGTCCAATCAAACCACAATAACTTGTTTCAATTAGTCAGCTGCCCTTTACAATAAGtgcatttaattattaatttattttttcccctcataATCTGATTACAACATCTGATAATGCAGAGTTTTGTATGGAATCTAATCAATGCTTTTAACATGAACTTGGGTGATCAgttaatctggaaaaaaaaaaaagaaaattcccCACATAGGGATTAAGCaaagtcttggactacacagcatagTGAATAGAGATTTTCTATTGAAATGAAAATATAGCCTCGGATTAGTCTTAATCCCGGTCCAAGAAACTGAACTTTTGCTTTAACAGCcaataaacttaaacttaaactcaaCTTTGAAACATTGAGCCACACTATAAACATACATCAGCTAGAAGATGAAGCTTATTCCAATCATTATGTTATTTCAGCATTGATCTGACAGTGAGCAGACTATGAAATTGGGGGAATACTCCAGTTAAGTGTATGCATGGATTTCTTAATTGAAACAATTTACActactactaaaataatcaaaCCAGATAATTGCAGAAATCTATTTAGAATCAGATTATAAAATGCATCTAAACGCACTCACTGGGTAACACGTAGAAACAAATGACCAAACAGATAAAATGGCTGATTTGGAGATTCCTAAGGATCAGTTATGACAGCGATGATCCACAAATGTCAGTGTATTGTTCATATGCCGTAGCACTGCACTGCCATGCTCTGTAAATCTGGGTTTGCACGACTCGTAACTTGTCAAgtctaaatgtataaataaagttaaagcgGTGCATTGCATTTCATTCAAAGAGCCTAAAAAGATACCATACTGTAAAACACATCACgtaaagaaagacaaagaaatgaAATGGAAATTAATGGAAAACTAAGAGGTAAACTGACATTTTGGCAGTCTCATGTATTTTAGTTATAGTGACTGCCACAACCAGTGtatgttcatttaaaataaaaaccatAATTACTGTTAATTACAATTCATTAAAAAGGGTTTTTATAAGACTGAAATGGTCCAATTAGGTTACTTTAAGCCTTTGCTTATTCTATCGATAAGTTTTTCTAGCATTAAATCAGATCTGATCCGATGTGTGGTTTCATAGAGAAAACAGTCACACAATGTAGGTTAATGGTGCTTGGCAGAACATTAATACTACAGTACATAACTTTGGATTTAGTTGAGATATTCCTTAACATTCTTGACTAATAcacttcatttttaaaatgtccatTTTACAGTGATTAATATAGAAATTGGAATTGAAattagtcctgtatctgtttccctacatactttattattctcttttCACTGCATTCTCTGATGTGCAGGATAGTccaccacagaacagctgttattatttgggtggtgggtcgttGTTCTCAGTAATGTgttattttgtaattatatttaaaattcattAGAAGTCAGTGATCTTcagagtaaaatgaatgatattggacagatataatctaaaCTGATGGCTATATTTTGGGgggaaattattttaaatgatcatttgtAAGCTTGCATTAAATACTATTATTACCTatatttctgctcttttttccCAGTTGATTGTTGACTGTGGTCAATGGCAGAAACAAACgtgttattattatagttcTCTATTCTCTTATACTATTGCACAATGTGGATTATGTCAGTTTAGGGCACCTTGTGAATTGGACATGGATCACCTTATACAGCCGATACCCCATTCATTAAATTATTGTAATTGTTGGTACACCCCTGGTCTAATGTTCTACAGCGGTACAGTGGTCTTCTTCTTAAATTACTGAGGTCAGGAATGAGTCCTCAGACAAGGCTTAAGTGCCAGGCTTGATCGTGGTCATAGTATAGTGCAATTAATTGTGAAAACTTTTCTGCTataaaacactgttattttctttctcttgacAGTCTTatgaggaaagagaaagagggaaaacaCCAAAGTAAATCTTGAGGAACCTTCCTttaccaaaaaagaaaagagtctAATGATTAAAAGCACAATTAAattgtggaaaaaaacaaaaaaaggaaaaggaatgAAACATGGTCCCTCGATTAATGAAACATGGACGATCCCTCTGCCTTGTTTCGACTATGCAGCCAAATTTGTGGAAAGCTGTAGGTATCTACAAAAATGCTCAAACATGTTCCTTCACATCTGGTGCTGCTATATGTATTCAGGGAtcacttttaaaaaagaaaggaatgCTGGTGGAAAATTTTAAGGGATGTCATATTCATCTCCCAGGCACAGAAGTCTATGTAGAGCTTGGCCATTTTACTGGTCTAGTCGTTGGTCCATGTGAATTCAGTTGGGTCTCagcctttttaaaaaagtggccAAACCTGGAAAATACTCATGTCATCACGTCTTTTTCAAGCAGGAAAGGAAATTCCCATTCTTACAGGATCTGAAATGTCAGTCTCGGTCAGGTGCGTCGCTCTGATTCAGTCTGCTGCTTTGATGTTGGACTCCTGCAGTAGGGGTCTCTGGTCTGAGTCTGCAGACAGGGCGAGGGCCTGCAGCGTGCTCCTCTGAATTTGCTTGGCTTTGTTATAAAGCATAACTCCCACAACCACAAGTACTGTACCCACAGCAGAAAGGGCTGTGATGGGGTTACTGAACACAATGATGCTGAGCCAGATGGACAAGGCATGTTTGACCGTG

Function

NR:

description
PREDICTED: solute carrier family 35 member E2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU79912 True 3521 lncRNA 0.36 2 46883350 46887023

Neighbor

gene id symbol gene type direction distance location
mmp23b mmp23b,LOC106572002 coding upstream 32118 46827968 ~ 46851232 (+)
LOC111192740 NA coding upstream 185835 46696479 ~ 46697515 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 460116 46405754 ~ 46423234 (+)
LOC111192690 LOC108432118 coding upstream 696450 46122861 ~ 46186900 (+)
LOC103044102 LOC108432094 coding upstream 813068 46057474 ~ 46070282 (+)
LOC103022408 LOC103022408,LOC108442345 coding downstream 21259 46908282 ~ 46923292 (+)
LOC103046622 LOC103046622 coding downstream 70083 46957106 ~ 46967434 (+)
LOC103046011 LOC108412059 coding downstream 101953 46988976 ~ 47024024 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding downstream 309638 47196661 ~ 47198250 (+)
cfap74 NA coding downstream 610591 47497614 ~ 47593327 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding upstream 58664 46819166 ~ 46824686 (+)
LOC111192739 NA non-coding upstream 192390 46690257 ~ 46690960 (+)
G59243 NA non-coding upstream 195323 46687261 ~ 46688027 (+)
G59241 NA non-coding upstream 198312 46684649 ~ 46685038 (+)
G59232 LOC103023429,LOC108442352,LOC108265644,LOC107549568,LOC107594970,LOC107739657,LOC107669024 non-coding upstream 275978 46600448 ~ 46607372 (+)
G59285 NA non-coding downstream 39656 46926679 ~ 46931683 (+)
G59465 NA non-coding downstream 109502 46996525 ~ 46998150 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 322578 47209601 ~ 47213248 (+)
G59539 NA non-coding downstream 446472 47333495 ~ 47340169 (+)
G59542 NA non-coding downstream 457987 47345010 ~ 47345582 (+)
G59257 cdk11a,LOC108265382 other upstream 1459 46852364 ~ 46881891 (+)
G58971 NA other upstream 1093196 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2016512 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2282390 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2299432 44579080 ~ 44583918 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 736531 47623554 ~ 47661357 (+)
G59782 NA other downstream 1983144 48870167 ~ 48879623 (+)
G59806 NA other downstream 2111137 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2435255 49322278 ~ 49370251 (+)
G59961 NA other downstream 2536493 49423516 ~ 49437613 (+)

Expression


Co-expression Network