G59465


Basic Information

Item Value
gene id G59465
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 46996525 ~ 46998150 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80180
TTGTTTAATCAaagctttattaatattaaagcgtAGCATAAAAAAGAGACACAAAATTACCATTTCTTAAAATCACATTTCAATCATACTTATGTAGTTAAATGAAAGTTTGGCGTTTGTACATTCACAAGACCCTAGTTTGGCAAAATTTTCCTTCaataatacaagaaaaaaaaaggctactTGAGTGACAACAGACTTTGGTAGGAACTGAAGTACTTTTTTAGAACAAATATCATTTAAACACTTagagaactccagtgtgaaattgactttggctatagtaaaacatgataaagaataCTAACCTTTGATGAATATCCCACCACCATTCTCCCACAACCAGAGGATAAAGCAATTTTGTTCATttgttcATGCTCAGCACTCGACCTGCCATGACTTTATTTAAGATGGCGGTGCCTGGACTCTGTGGGATGCCTTGTTTTAGATTTCAGGGCTCTGCGGATTCTAGCATTGagttgtggagctactttgagctggacaatggtgtaaaaagtgatttatctgcaagGGGAAAAATATGCGCTGTATCACCCATTCTTAAAAGCCTGTTTGGAAATAGAACCAAATTGCTGGATCTCGGATCGCtgcgggagaacagaggtgggaTATTCACCAAAGGTTAGTATgctatcatgttttactacagccaaagtcaatttcacacctaAACTctcttttaactttaaaaatctGGGTTGAGCTGAGCCACTACAACAATGCCAGCtaacattttagaaaatacACATCCCCAATGAGAAGGTTTGGAGAGGGTTGGATAGGAGAGGAGTAAACCTTACCCCTACAGGAGCTTAGGAGAGAGGAGGTGAGTAGAGAAAGCAGAGGgtagaagagagggagaggtttGCCTCCTTTCCTGCATCAATGAACAGTTTATTTCATATCTACATAACTGATCtttcaacaaaaatgtaatgctTCGACAACCAATGTACAAATTTATCAAACAGCTATTTTCTTGGCGTAACCTTCAAGAACCAAGGGATCATTTCAACAAAATCCGGTCTTACTGTGTGTGGGGGAGGTGGTAGTTGCCAACCGAATCACTGGAGCAATTTGAGTTTCAGTGCATGTACTTTTGGTGTAAGCTTAGTTGAGTCCAGGTCCTTCAGGGTTTTCTGGTACACCTCAAATGTACGCTTCAGGCTTTTTGGATTGCTCAAGAGTGCATAAATCTGTCCATAAAGCAGAGAGAACGGAGAACGTCCACGCCTTCCAGCACAACATCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80180 True 1273 lncRNA 0.40 2 46996525 46998150

Neighbor

gene id symbol gene type direction distance location
LOC103046622 LOC103046622 coding upstream 29091 46957106 ~ 46967434 (+)
LOC103022408 LOC103022408,LOC108442345 coding upstream 73233 46908282 ~ 46923292 (+)
mmp23b mmp23b,LOC106572002 coding upstream 145293 46827968 ~ 46851232 (+)
LOC111192740 NA coding upstream 299010 46696479 ~ 46697515 (+)
LOC111192738 ninj1,LOC100690894,LOC106565158 coding upstream 573291 46405754 ~ 46423234 (+)
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding downstream 198511 47196661 ~ 47198250 (+)
cfap74 NA coding downstream 499464 47497614 ~ 47593327 (+)
LOC103044878 NA coding downstream 666730 47664880 ~ 47672297 (+)
cacna1d cacna1d coding downstream 713226 47711376 ~ 47856532 (+)
il17rb NA coding downstream 882246 47880396 ~ 47893955 (+)
G59285 NA non-coding upstream 64842 46926679 ~ 46931683 (+)
G59276 LOC108265386,LOC108442346 non-coding upstream 109502 46883350 ~ 46887023 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding upstream 171839 46819166 ~ 46824686 (+)
LOC111192739 NA non-coding upstream 305565 46690257 ~ 46690960 (+)
G59243 NA non-coding upstream 308498 46687261 ~ 46688027 (+)
G59525 LOC103145049,LOC108412246 non-coding downstream 211451 47209601 ~ 47213248 (+)
G59539 NA non-coding downstream 335345 47333495 ~ 47340169 (+)
G59542 NA non-coding downstream 346860 47345010 ~ 47345582 (+)
G59544 NA non-coding downstream 433447 47431597 ~ 47435387 (+)
G59545 NA non-coding downstream 434916 47433066 ~ 47435011 (+)
G59257 cdk11a,LOC108265382 other upstream 114634 46852364 ~ 46881891 (+)
G58971 NA other upstream 1206371 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2129687 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2395565 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2412607 44579080 ~ 44583918 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 625404 47623554 ~ 47661357 (+)
G59782 NA other downstream 1872017 48870167 ~ 48879623 (+)
G59806 NA other downstream 2000010 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 2324128 49322278 ~ 49370251 (+)
G59961 NA other downstream 2425366 49423516 ~ 49437613 (+)

Expression


Co-expression Network