G59539


Basic Information

Item Value
gene id G59539
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47333495 ~ 47340169 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80278
ctgtgtctcagtacttttccatgtgtttctcatttgtagctccgcccctgccccaggtgtttctaattatagtgtttcctgtttccttatatagccctcgtctaccactttgtctccgtcggtctttgcaccttcccctgttgttttgtctctccgtgttcttccatgtttcatagccctagtcaTTGCCCGTGTTTACCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80278 True 202 lncRNA 0.47 2 47333495 47340169

Neighbor

gene id symbol gene type direction distance location
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding upstream 135245 47196661 ~ 47198250 (+)
LOC103046011 LOC108412059 coding upstream 309471 46988976 ~ 47024024 (+)
LOC103046622 LOC103046622 coding upstream 366061 46957106 ~ 46967434 (+)
LOC103022408 LOC103022408,LOC108442345 coding upstream 410203 46908282 ~ 46923292 (+)
mmp23b mmp23b,LOC106572002 coding upstream 482263 46827968 ~ 46851232 (+)
cfap74 NA coding downstream 157445 47497614 ~ 47593327 (+)
LOC103044878 NA coding downstream 324711 47664880 ~ 47672297 (+)
cacna1d cacna1d coding downstream 371207 47711376 ~ 47856532 (+)
il17rb NA coding downstream 540227 47880396 ~ 47893955 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding downstream 587786 47927955 ~ 47933611 (+)
G59525 LOC103145049,LOC108412246 non-coding upstream 120247 47209601 ~ 47213248 (+)
G59465 NA non-coding upstream 335345 46996525 ~ 46998150 (+)
G59285 NA non-coding upstream 401812 46926679 ~ 46931683 (+)
G59276 LOC108265386,LOC108442346 non-coding upstream 446472 46883350 ~ 46887023 (+)
G59259 ubiad1,LOC107718257,LOC107572294,LOC107575167 non-coding upstream 508809 46819166 ~ 46824686 (+)
G59542 NA non-coding downstream 4841 47345010 ~ 47345582 (+)
G59544 NA non-coding downstream 91428 47431597 ~ 47435387 (+)
G59545 NA non-coding downstream 92897 47433066 ~ 47435011 (+)
G59546 NA non-coding downstream 96401 47436570 ~ 47436953 (+)
G59550 gabrd non-coding downstream 117018 47457187 ~ 47461165 (+)
G59257 cdk11a,LOC108265382 other upstream 451604 46852364 ~ 46881891 (+)
G58971 NA other upstream 1543341 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2466657 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2732535 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2749577 44579080 ~ 44583918 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 283385 47623554 ~ 47661357 (+)
G59782 NA other downstream 1529998 48870167 ~ 48879623 (+)
G59806 NA other downstream 1657991 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 1982109 49322278 ~ 49370251 (+)
G59961 NA other downstream 2083347 49423516 ~ 49437613 (+)

Expression


Co-expression Network