G59542


Basic Information

Item Value
gene id G59542
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 47345010 ~ 47345582 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80281
CCTGGATGTCGAGCTGAAGTGCAGGAGAGCAATCTCTTCCagctcaccctcacacacacacatatagtcaCACACTCAtatccacacactcacacacacaagcacacacacgcacgcacaggGCCCTCTCTGATCAAGCGGTAATCCTCTCTTTGTGTCAACGGCTAGCAGAAAAATGTGTCCAGCACAATGATCCTTCTCTGGGAAGACGAACTGGAAAAAAAGGAGCGTGCAAAacgagggagggaaagagagcgagagcgagaccAAGAGCGGGTGAtggacagagtgtgtgtgtgagagagagagagagaatgagaaagaaaggaggctgagaagagaggagagagagagagagagcg
>TU80282
CCTGGATGTCGAGCTGAAGTGCAGGAGAGCAATCTCTTCCagctcaccctcacacacacacatatagtcaCACACTCAtatccacacactcacacacacaagcacacacacgcacgcacaggGCCCTCTCTGATCAAGCGGTAATCCTCTCTTTGTGTCAACGGCTAGCAGAAAAATGTGTCCAGCACAATGATCCTTCTCTGGGAAGACGAACTGGAAAAAAAGGAGCGTGCAAAacgagggagggaaagagagcgagagcgagaccAAGAGCGGGTGAtggacagagtgtgtgtgtgagagagagagagagaatgagaaagaaaggaggctgagaagagagagagagaggagagcgtGCACaccaaagagaaagagagagagagagagagggagagaggaatgAAAGAGTAACAGCAGAAGCAAGAGAGGGCTGGCGGTCGGCAGAGGATTTGAAGAATGAGAGAGCAGGGGAGGTGGAGGGAGAGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80281 False 362 lncRNA 0.51 2 47345010 47345582
TU80282 True 491 lncRNA 0.52 2 47345010 47345520

Neighbor

gene id symbol gene type direction distance location
LOC103040284 LOC108412055,LOC108265574,LOC105899021 coding upstream 146760 47196661 ~ 47198250 (+)
LOC103046011 LOC108412059 coding upstream 320986 46988976 ~ 47024024 (+)
LOC103046622 LOC103046622 coding upstream 377576 46957106 ~ 46967434 (+)
LOC103022408 LOC103022408,LOC108442345 coding upstream 421718 46908282 ~ 46923292 (+)
mmp23b mmp23b,LOC106572002 coding upstream 493778 46827968 ~ 46851232 (+)
cfap74 NA coding downstream 152032 47497614 ~ 47593327 (+)
LOC103044878 NA coding downstream 319298 47664880 ~ 47672297 (+)
cacna1d cacna1d coding downstream 365794 47711376 ~ 47856532 (+)
il17rb NA coding downstream 534814 47880396 ~ 47893955 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding downstream 582373 47927955 ~ 47933611 (+)
G59539 NA non-coding upstream 4841 47333495 ~ 47340169 (+)
G59525 LOC103145049,LOC108412246 non-coding upstream 131762 47209601 ~ 47213248 (+)
G59465 NA non-coding upstream 346860 46996525 ~ 46998150 (+)
G59285 NA non-coding upstream 413327 46926679 ~ 46931683 (+)
G59276 LOC108265386,LOC108442346 non-coding upstream 457987 46883350 ~ 46887023 (+)
G59544 NA non-coding downstream 86015 47431597 ~ 47435387 (+)
G59545 NA non-coding downstream 87484 47433066 ~ 47435011 (+)
G59546 NA non-coding downstream 90988 47436570 ~ 47436953 (+)
G59550 gabrd non-coding downstream 111605 47457187 ~ 47461165 (+)
G59555 gbrd,gabrd,LOC106566882 non-coding downstream 122122 47467704 ~ 47511422 (+)
G59257 cdk11a,LOC108265382 other upstream 463119 46852364 ~ 46881891 (+)
G58971 NA other upstream 1554856 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 2478172 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 2744050 44595233 ~ 44600960 (+)
LOC103028384 ptges2,LOC107083974,LOC107081068 other upstream 2761092 44579080 ~ 44583918 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other downstream 277972 47623554 ~ 47661357 (+)
G59782 NA other downstream 1524585 48870167 ~ 48879623 (+)
G59806 NA other downstream 1652578 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 1976696 49322278 ~ 49370251 (+)
G59961 NA other downstream 2077934 49423516 ~ 49437613 (+)

Expression


Co-expression Network