G59734


Basic Information

Item Value
gene id G59734
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48477837 ~ 48478110 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80539
tgccagagctgcaggtcagtcctcagtgctcattctgctggacctctcggccgcatttgacacagtcaaccatgacttcctcctaactatactctcaaacatggggatcgcagacaatgtgctgtcatggttcagatcatacctcactgggcgctcgttcaaggtgtcgtggcaaggacagctgtcctcagcccgctccttatccactggggttccccaaggttcggtactgggaccccttctcttctccatatacaccacctctcttggtcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80539 True 274 lncRNA 0.54 1 48477837 48478110

Neighbor

gene id symbol gene type direction distance location
cacna2d3 cacna2d3 coding upstream 59625 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 544226 47927955 ~ 47933611 (+)
il17rb NA coding upstream 583882 47880396 ~ 47893955 (+)
cacna1d cacna1d coding upstream 621305 47711376 ~ 47856532 (+)
LOC103044878 NA coding upstream 805540 47664880 ~ 47672297 (+)
cep350 NA coding downstream 725158 49203268 ~ 49268872 (+)
LOC103029228 NA coding downstream 794884 49272994 ~ 49308775 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding downstream 992322 49470432 ~ 49539741 (+)
sin3b sin3b,LOC106613916 coding downstream 1070534 49548644 ~ 49568835 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 1092602 49570712 ~ 49600806 (+)
G59733 NA non-coding upstream 43634 48433973 ~ 48434203 (+)
G59732 NA non-coding upstream 46606 48430922 ~ 48431231 (+)
G59731 NA non-coding upstream 54331 48423289 ~ 48423506 (+)
G59603 NA non-coding upstream 556790 47920308 ~ 47921047 (+)
G59597 selenok,selk,LOC107750820,LOC107693600,LOC107594974 non-coding upstream 558503 47912516 ~ 47919334 (+)
G59735 NA non-coding downstream 210 48478320 ~ 48478763 (+)
G59772 NA non-coding downstream 40959 48519069 ~ 48520282 (+)
G59788 NA non-coding downstream 429605 48907715 ~ 48908027 (+)
G59793 apeh,LOC105013991 non-coding downstream 444480 48922590 ~ 48925434 (+)
G59798 NA non-coding downstream 450348 48928458 ~ 48928806 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 816480 47623554 ~ 47661357 (+)
G59257 cdk11a,LOC108265382 other upstream 1595946 46852364 ~ 46881891 (+)
G58971 NA other upstream 2687683 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 3610999 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 3876877 44595233 ~ 44600960 (+)
G59782 NA other downstream 392057 48870167 ~ 48879623 (+)
G59806 NA other downstream 520050 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 844168 49322278 ~ 49370251 (+)
G59961 NA other downstream 945406 49423516 ~ 49437613 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 1389508 49867618 ~ 49990417 (+)

Expression


Co-expression Network