G59772


Basic Information

Item Value
gene id G59772
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 48519069 ~ 48520282 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80578
CAagagaaaataattttaatgcacagAGACAATCTGGCCACTGCAAAACAGTCAGGAGTGATTATTTGCCGTGCAGCTCTGTGAGCATCACAACCTCacaaacttacacacacacacatcactgtccacaacacacacacacacacacacacatataacattATACCTTCCTGTTGTTGCAACAACCAGGATGAAACCCTGCAGTCAAGCATTGCTTTGtttaaacaacaataataaaaaagattgttaaagtaaataaattaataaatgaatgaacaaacaaacaaacaagcaacttACTGagcagcagacagacagacagataaaaaaaaaacaacaccaacAAAATCCTACAGACAGCTTTCGCAATGAACAGTCTGTACAAAACAGATGAATATCACAAGAAACCgacaaaaaaagaagtaaaaagtaagcaaaacaatacaaaaaacacaaacaaataaccCAAAACAACAACATACAGAGCATGAAAAAAGAGTgcaacacagtgttttacatcaATATCACCATTCTATAAACATGACAATGTTACAGCTCGTTTGCAATTTtattaagaatttttttttaaaataggagCAAGAATGCACGAAGTTCAGGTTCCAGATAATGAATGGGATTTCACATCACATCATCAGTGATTTACTGATATACTGACggctctgcagtttaaatgcAGTTGTTGGGGCAATGAGTGTACTGATTTCTAAAGATGAATAGTAAAGAATAGAAGGTGGCGTTTATTTGCTTTCATTAATTGCTAGAAATGGAAGAATTTGTTTTCAATCTcaattttcttcttattttaatttacagCAAGGTAGTATTTTTAATACTTCAAGcaaactttcttttttaaatcatttcagACTCCCACCTGGTCCTCTGCTTTCTGTGATAGAGCTTTTTCACCAAAAGAACTTAAACTGGTTATTTCCGTGCTACTTTTTAGCGAAACAGCCCACGTTTTGATCAgatcacatgtctctccaaaccatcactgatcatcagtaaattttacattatatttttgaatcaagggatcagagtctggaggaagagtggagagacacacagtccaaactgctcgaggtctagtgtgaagattccaccaatcagtgatggtttggataaagagacatgtcatctgct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80578 True 1170 lncRNA 0.35 2 48519069 48520282

Neighbor

gene id symbol gene type direction distance location
cacna2d3 cacna2d3 coding upstream 100857 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 585458 47927955 ~ 47933611 (+)
il17rb NA coding upstream 625114 47880396 ~ 47893955 (+)
cacna1d cacna1d coding upstream 662537 47711376 ~ 47856532 (+)
LOC103044878 NA coding upstream 846772 47664880 ~ 47672297 (+)
cep350 NA coding downstream 682986 49203268 ~ 49268872 (+)
LOC103029228 NA coding downstream 752712 49272994 ~ 49308775 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding downstream 950150 49470432 ~ 49539741 (+)
sin3b sin3b,LOC106613916 coding downstream 1028362 49548644 ~ 49568835 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 1050430 49570712 ~ 49600806 (+)
G59735 NA non-coding upstream 40306 48478320 ~ 48478763 (+)
G59734 NA non-coding upstream 40959 48477837 ~ 48478110 (+)
G59733 NA non-coding upstream 84866 48433973 ~ 48434203 (+)
G59732 NA non-coding upstream 87838 48430922 ~ 48431231 (+)
G59731 NA non-coding upstream 95563 48423289 ~ 48423506 (+)
G59788 NA non-coding downstream 387433 48907715 ~ 48908027 (+)
G59793 apeh,LOC105013991 non-coding downstream 402308 48922590 ~ 48925434 (+)
G59798 NA non-coding downstream 408176 48928458 ~ 48928806 (+)
G59853 NA non-coding downstream 512555 49032837 ~ 49035805 (+)
G59855 NA non-coding downstream 516331 49036613 ~ 49037045 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 857712 47623554 ~ 47661357 (+)
G59257 cdk11a,LOC108265382 other upstream 1637178 46852364 ~ 46881891 (+)
G58971 NA other upstream 2728915 45789711 ~ 45790154 (+)
LOC103029434 dgcr6,LOC103029434,LOC108430318,LOC107572069,LOC107721026,LOC108265986,LOC105899531 other upstream 3652231 44852780 ~ 44866838 (+)
G58696 snrnp200,LOC106579886,LOC106585548 other upstream 3918109 44595233 ~ 44600960 (+)
G59782 NA other downstream 349885 48870167 ~ 48879623 (+)
G59806 NA other downstream 477878 48998160 ~ 48998471 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other downstream 801996 49322278 ~ 49370251 (+)
G59961 NA other downstream 903234 49423516 ~ 49437613 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 1347336 49867618 ~ 49990417 (+)

Expression


Co-expression Network