G59961


Basic Information

Item Value
gene id G59961
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 49423516 ~ 49437613 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU80792
tctctctttcagtctgtgtaactctccctctctccctttctctcggACTGAGTTTGTTTACTCGGGCTCGCGGATATGCCTCTGACAGCGTGATAAGCGCGCGGACAAACACACGGCAGAGATTATCCCGGAGctttagtgtgtgtggagtgtgttgggGGGTGAGAGAGTGTGCGGGGGGTGAGGGAGTGATCGGATCTTCAGGATGAAGTTCGCTGAGCACCTTTCAGCCCACATCACCCCCGAGTGGAGGAAACAGTACATCCAGTatgagGCGTTTAAGGAGATGCTGTACGCGGCCCAGGACCAGGCGCCCTCCATAGAAGGTAAGCAGGCTGCCCTTAGAGGAACCACGCCGGCCCAGCCAGGAATAACCAGCACTATTAATAGAGACCATTCCAGAAACGTTGTGTCTCGCAGCATTGCCCCACTGCCAGCCTGCCCTGGCCTGTCCAGGGGGTGTGGGCAGGGGCAGGGCCTTTGGCTGTAATGAGTGTGGGTCACAGTGATGATGCTGTTGATTTTAATGCAGTAATTGGCCGGGCCGGACTGAAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU80792 True 557 TUCP 0.56 2 49423516 49437613

Neighbor

gene id symbol gene type direction distance location
LOC103029228 NA coding upstream 114741 49272994 ~ 49308775 (+)
cep350 NA coding upstream 154644 49203268 ~ 49268872 (+)
cacna2d3 cacna2d3 coding upstream 1005304 47998093 ~ 48418212 (+)
LOC103038409 LOC103038409,LOC108411948,LOC107724878,LOC107667523,LOC107689282,LOC107711839,LOC107602832,LOC107600045 coding upstream 1489905 47927955 ~ 47933611 (+)
il17rb NA coding upstream 1529561 47880396 ~ 47893955 (+)
LOC103028608 xpr1a,xpr1,LOC107755298,LOC107758009,LOC107699288,LOC107665065,LOC107603171 coding downstream 32819 49470432 ~ 49539741 (+)
sin3b sin3b,LOC106613916 coding downstream 111031 49548644 ~ 49568835 (+)
LOC103028292 def6,def6a,LOC107550223,LOC107757990,LOC107755289,LOC107700524,LOC107599059 coding downstream 133099 49570712 ~ 49600806 (+)
ndufb11 ndufb11 coding downstream 165178 49602791 ~ 49606898 (+)
LOC103028705 LOC103028705,LOC108265463,LOC108411640,LOC105890655,LOC108438067,LOC105006799,LOC103466989,LOC105026930 coding downstream 170986 49608599 ~ 49613480 (+)
G59883 NA non-coding upstream 151533 49239227 ~ 49271983 (+)
G59855 NA non-coding upstream 386471 49036613 ~ 49037045 (+)
G59853 NA non-coding upstream 387711 49032837 ~ 49035805 (+)
G59798 NA non-coding upstream 494710 48928458 ~ 48928806 (+)
G59793 apeh,LOC105013991 non-coding upstream 498082 48922590 ~ 48925434 (+)
G59970 NA non-coding downstream 14909 49452522 ~ 49453328 (+)
G59972 NA non-coding downstream 16816 49454429 ~ 49455103 (+)
G59976 NA non-coding downstream 21836 49459449 ~ 49460506 (+)
G59986 NA non-coding downstream 41472 49479085 ~ 49479357 (+)
G59996 NA non-coding downstream 65904 49503517 ~ 49503723 (+)
lhx4 lhx4,LOC108412864,LOC107665078,LOC107755297,LOC107599001,LOC107699337,LOC107550233,LOC107758007 other upstream 53265 49322278 ~ 49370251 (+)
G59806 NA other upstream 425045 48998160 ~ 48998471 (+)
G59782 NA other upstream 543893 48870167 ~ 48879623 (+)
gnb1 gnb1,gnb1a,LOC103044197,LOC104956353,LOC107666091,LOC107595416,LOC107385217 other upstream 1762159 47623554 ~ 47661357 (+)
G59257 cdk11a,LOC108265382 other upstream 2541625 46852364 ~ 46881891 (+)
LOC103025235 LOC103025235,LOC108413084,LOC108265140,LOC107598993,LOC107665077,LOC107755310,LOC107603028 other downstream 430005 49867618 ~ 49990417 (+)
LOC103045694 NA other downstream 1201881 50639494 ~ 50652906 (+)
G60481 LOC108440552,LOC108265824,LOC107743114,LOC107552217 other downstream 1838587 51276200 ~ 51286140 (+)
hdac6 hdac6,LOC107584872,LOC107674364,LOC107701824,LOC107552211,LOC107743106,LOC107727426 other downstream 1949957 51387570 ~ 51409262 (+)
otud5 otud5,otud5a,LOC107653422,LOC107743098,LOC107734530,LOC107674365,LOC107584889 other downstream 2327466 51765079 ~ 51826103 (+)

Expression


Co-expression Network